Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq3 143 6e-29 >seq1 Length=6968282 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 |||||||||||||||||||| || || || | || | ||| ||||||| ||||| || Sbjct 6898225 GTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGTGCGTCCGTCTTCCAATTGCTTACCA 6898166 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || || ||||||||||| || |||| ||||| ||||| |||||||| ||| Sbjct 6898165 GCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCTTTG 6898106 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || || ||| |||||| || || || ||||| ||||| || || || ||| Sbjct 6898105 ACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGATTGTCTTACCAGTAAGTGTC 6898046 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 6898045 TTGACAAAGATTTGCAT 6898029 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | ||| || || ||||||||||| ||||| || | || || |||||| Sbjct 595537 AGGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCT 595478 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || ||||| | ||||||||||| || |||| |||||||||||| Sbjct 595477 TCCAATTGCTTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCT 595418 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || ||||| || ||||| ||| Sbjct 595417 TGGATCTTAGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGTC 595358 Query 211083 TTTCCCGT 211090 || || || Sbjct 595357 TTACCTGT 595350 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| || || || ||||| || ||||| ||||| || | || | ||| ||||| Sbjct 6898010 GACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCGTCTTC 6897951 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || ||||| ||||| | ||||||||||| || || | ||||| ||||| || Sbjct 6897950 CAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTG 6897891 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| ||| ||||| || || ||||| |||||| || || || ||||| ||||| Sbjct 6897890 GATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGATTGTCTT 6897831 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| ||||| | ||||| Sbjct 6897830 TCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| | ||||| || ||||||||||| ||||| || | || | |||||||| Sbjct 5660999 GACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATCTTC 5661058 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||| || || ||||| | ||||||||||| || |||| ||||||||||| || Sbjct 5661059 CAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTG 5661118 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || || || || || |||||||||||| ||||| || || Sbjct 5661119 AATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGTTTT 5661178 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || |||||||| | ||||| Sbjct 5661179 ACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| |||||||| ||||||||||| || || || | || | || ||||||| || Sbjct 6897776 GTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCGTCTTCCAATTG 6897717 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | ||||||||| || || | ||||| ||||| |||||||| Sbjct 6897716 CTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 6897657 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || || || || |||||| ||||||||| || || || ||||| || || Sbjct 6897656 GGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATTGTCTTACCAGT 6897597 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | ||||| Sbjct 6897596 CAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||||||||| ||||| || | || | || ||||||| || || ||| Sbjct 6898453 GTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTCCAATTGTTTACCT 6898394 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | ||||||||||| || || | ||||| ||||| || ||||| ||| Sbjct 6898393 GCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTGTCTTGAATCTTGGCTTTG 6898334 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || ||||| || |||||| || | |||||||||||||| || | || Sbjct 6898333 ACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGTCTTTCCTGTCAATGTT 6898274 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 6898273 TTGACAAAGATTTGCAT 6898257 >seq3 Length=3165745 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| | ||| | || || || || ||| || |||||||| || ||||| || | || Sbjct 2529453 ACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCCAATGT 2529394 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| || || |||||||| |||||||| || || |||| || Sbjct 2529393 ACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACC 2529334 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || ||||| || ||||| || ||||| || || ||||||||| | Sbjct 2529333 TTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACCTCCAA 2529274 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||||||| || | ||| |||||||| | ||||| Sbjct 2529273 AGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || ||||||||| |||||||| ||||| ||||| || | || | ||| ||||| Sbjct 2529668 ACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTCTTCT 2529609 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | || || || || ||||| | ||||||||||| || |||| ||||| || ||||| Sbjct 2529608 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATCCTGA 2529549 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||| ||||| ||||| || ||||| ||| ||||| | || || || ||| Sbjct 2529548 ATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATAGTTTTT 2529489 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| | ||||| ||||| | ||||| Sbjct 2529488 CCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151138605170