Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 >seq3 Length=3165745 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 ||||| || || | ||| || ||||| |||||||| || || |||||||| | ||| ||| Sbjct 2529677 AAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGT 2529618 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 |||| || | ||||| || ||||| || | ||| || ||||| | || | | ||| Sbjct 2529617 CCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCT 2529558 Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 || ||| || || ||||| | | | ||||| || ||||| |||| || Sbjct 2529557 TTATCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTA 2529498 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||||||||||| || || |||||||||||||| Sbjct 2529497 ATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || || | ||| || ||||| || ||||| ||||| |||||||| | ||| || | || Sbjct 2529443 AAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCCAATGTACGACCATCT 2529384 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | || || || ||||| |||||||| || || || | || | | |||||||| Sbjct 2529383 TCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 2529324 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACT 39251 || || |||| ||| | || | |||| || || || |||| ||||| | Sbjct 2529323 TGAATCTTGGCCTTGA-CGTTGTCAATGGTATCCGAAGATTCAACCTCCAAAGTGATCGT 2529265 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| ||||| |||||||||||||| Sbjct 2529264 CTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545296364954