Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 156 3e-33 seq3 122 6e-23 >seq1 Length=6968282 Score = 156 bits (172), Expect = 3e-33 Identities = 164/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || |||||||| ||||| ||||| ||||| ||||| ||||| || | Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| |||| |||| | || ||||| |||||| | || ||||| || Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGA-TTCAAGACAAGGAAGGTATTCCACCAGACCA 5661090 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| ||||| || || ||| ||||||| | || ||||| | |||||||| Sbjct 5661089 ACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAA 5661030 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| || ||||| || || || || || Sbjct 5661029 CATCCAAAAGGAATCCACCTTGCACTTGGTCTT 5660997 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || ||||| |||||||| | |||||||| || | Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | || |||||||||||| | |||||||| || Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGA-TTCAAGACAAAGAAGGTATCCCGCCAGACCA 6898375 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| ||||||||| || ||||| | |||||||| Sbjct 6898376 ACAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAA 6898435 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| || || || || || || || || Sbjct 6898436 CATCCAAAAGGAATCTACCTTGCACTTGGTGTT 6898468 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || || ||||| || ||||| || ||||| || || Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | ||| || || |||||||||||| | || ||||| ||| Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || |||||| ||||||||| |||||| || | ||||||||| Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAAC 6897980 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || ||||| || ||| | || || || || Sbjct 6897981 ATTCAGAAAGAATCTACACTCCACTTGGTCTT 6898012 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || || || || || ||||| ||| | Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | || | | |||||||||||| | || ||||| || Sbjct 6897633 GATACTATTGACAATGTCAAAGCCAAGA-TCCAAGACAAAGAAGGTATCCCACCAGACCA 6897691 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || ||| ||||||||| |||||||| | || ||||| Sbjct 6897692 ACAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAA 6897751 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| ||||||||| | || || || || Sbjct 6897752 CATCCAAAAGGAGTCCACACTTCACTTGGTGTT 6897784 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || || || ||||| || ||||| || || Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | || | | |||||||||||| | || ||||| || Sbjct 6898089 GATACAATTGATAATGTCAAAGCCAAGA-TCCAAGACAAAGAAGGTATTCCACCAGACCA 6898147 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || || || || ||| ||||||||| |||||| || | || ||||| Sbjct 6898148 ACAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGACGGACGCACATTGGCTGACTACAA 6898207 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| |||||||||||||| |||||||| || || Sbjct 6898208 CATCCAAAAAGAGTCCACCTTACATTTGGTATT 6898240 >seq3 Length=3165745 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || ||||| ||||||||| | || ||||| || || Sbjct 2529232 ATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCG 2529291 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || ||| |||||||||||| | || ||||||||| Sbjct 2529292 GATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2529351 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||| ||||||| | || || || | ||||||||| Sbjct 2529352 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAAT 2529411 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || |||| | ||| | ||||| || || || || || Sbjct 2529412 ATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGATTACGTGGTGG 2529458 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | ||||||||||| || || | || || || || | Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| || ||| || ||||||||| | || ||||| ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || |||||| | ||||||| ||| || || | |||||||||| Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAAC 2529639 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||| ||| | ||| | ||||| | ||||| || ||| Sbjct 2529640 ATTCAAAAAGAAAGCACTCTTCATCTCGTTTTGCGCTTGCGTGGCGGA 2529687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009361069464