Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=6968282 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 ||||||| |||||| || ||||| ||||| || |||||||| |||| ||| | ||| Sbjct 6898468 AACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCT 6898409 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||||||||| || ||| | || | | |||||||||| || | ||||||||||| Sbjct 6898408 TCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTGTCT 6898349 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 ||| || ||| |||| | | | ||| || | || ||| | || || || Sbjct 6898348 TGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGTC 6898289 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || ||||||||||| | ||| |||||||| Sbjct 6898288 TTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || |||| |||||| || ||||| ||||| || |||||||| |||| ||| |||| Sbjct 5660997 AAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATCT 5661056 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 |||||||| || || ||| | || | | |||||||||| || | ||||| ||||| Sbjct 5661057 TCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCT 5661116 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 ||| ||| || |||| | | | || || | || |||| ||| || ||| Sbjct 5661117 TGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGTT 5661176 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || ||||| | ||||| | |||||||||||| Sbjct 5661177 TTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||||||||| ||||| ||||| || |||||||| |||| |||| || ||||||| Sbjct 595534 ACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCTTCC 595475 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 ||||| || || ||| | || | | |||||||||| || | ||||| ||||| Sbjct 595474 AATTGCTTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTC 595419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409660510421022