Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 257 1e-63 >seq2 Length=3834998 Score = 257 bits (284), Expect = 1e-63 Identities = 584/862 (68%), Gaps = 26/862 (3%) Strand=Plus/Minus Query 4255 ATTTTTG-GTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATA 4313 || |||| |||||||| || || || ||||| ||||| || || ||| || || Sbjct 1008051 ATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAAGAGATG 1007992 Query 4314 TTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTC---ACACTTTAGAGCT 4370 || ||||| |||| || || || ||||| ||||| ||||| || | | ||| Sbjct 1007991 TTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCC---AAAGCC 1007935 Query 4371 ACAAGCAATCGGTCAGCTACA-AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCC 4429 || | | || ||||| ||| ||||| || || || | ||| | || | |||| ||||| Sbjct 1007934 ACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTTCATTCC 1007876 Query 4430 AATTAATCTCACAGGTAGCGCGTATGTCAA-AAACTCTTGTTCTATAGTTACGGCTTCTG 4488 ||||| | |||| || | || || ||||| |||||| || | || ||||||| Sbjct 1007875 GATTAAGTTGCATGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACAGCTTCTG 1007817 Query 4489 TGATTATATCTTTTATTTTATCTTTAGATG-GTTTATTTACT-AAGTATCCAAACAATAA 4546 |||| || | || | | |||| |||| | |||| || | | ||||| || Sbjct 1007816 TGATAATCTTGTTCACTGTATCAG--GATGAGCGCGCTTACGCAAATGGCTGAACAACAA 1007759 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| || |||||| || |||||||| |||||||| |||| ||| || || || || || Sbjct 1007758 ACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGTCAA 1007699 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 |||||||| || || | ||| || ||||| || ||| || ||||| ||| ||||| Sbjct 1007698 ACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAAGAA 1007639 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG-CTGGCTTTGTCTT 4725 || ||||| ||||| ||||| || || || || | || | | | |||| ||| Sbjct 1007638 GATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTT-GTCAG 1007580 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 |||||| |||| |||||| | || ||| | || ||| |||||||| | ||||| | Sbjct 1007579 AAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGCAT 1007520 Query 4786 TAAATAAT---TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 || || | | || ||| ||||| | || || || || || | | | Sbjct 1007519 CGAACAAGAACTCGCGTTGATCA---GGGTCACGGATGTATGTATCAATCAACAAAGAGT 1007463 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 | |||| || || || ||||| || || || || || || |||||||| ||||||| Sbjct 1007462 AAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTG 1007403 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | |||||||||| | |||| ||| || |||||||| || || ||||| ||| | Sbjct 1007402 CTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAG 1007343 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT-- 5020 | ||||| || |||||||| ||||| || || | |||||| || | || || Sbjct 1007342 CGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTTGT 1007283 Query 5021 -CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 ||| | | |||||||||| | ||||||| ||||| | ||||| || || ||||| | Sbjct 1007282 CCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTG 1007223 Query 5080 CTTTTTTGTACATAGACCAAAT 5101 ||||||||||||| |||||| Sbjct 1007222 CTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049298129314