Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 408 6e-109 >seq2 Length=3834998 Score = 408 bits (452), Expect = 6e-109 Identities = 1220/1860 (66%), Gaps = 37/1860 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || ||| ||||||||| || || | || || |||| || ||||||||||||| Sbjct 3099279 GCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTTAATCCTTTCTTCCATCCGTAGAAG 3099338 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| ||||||| || | | |||| || || ||| || |||| |||||| Sbjct 3099339 TGCATACTTGTCAATTGACCAAATGTAGGTGCGCTTAAATGGATGTTCAAACTTTGACTT 3099398 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || ||||| ||||| | ||| || ||||| | || || | |||||| |||||| Sbjct 3099399 TGGCAAATGAATGCTCCACGATCGGCTGCCATATCAATGATTGCTTTTTGACTGATTTCC 3099458 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAA 77039 |||| || ||| | | | ||||||||||||||||| || | |||||||| || Sbjct 3099459 CAAACGGTCTTGTACAATCTTTTGATATCATCTGGAATTCCTGGAACGTTTTGAATTGAT 3099518 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 ||||||| | || ||| | ||||| || || ||| | | ||| |||| | Sbjct 3099519 CCACCATGAGCAATGATTCTGTTCTTCATTGTTTCTGACCATAGT--CCT---TGTTCCA 3099573 Query 77100 AC--TCTAAGGAGATGA----GGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153 | | || | | || | || ||||| | ||| |||||||| | || || | | Sbjct 3099574 CCAATGTACGTA-ATAACCATGGGTTAACAACTTGGAATTCTCCTGCTAACACACGCCTT 3099632 Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 ||||| || || ||| | ||||| | |||||||| ||| ||||||||| ||| Sbjct 3099633 GTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCATTGAATCCTAAAATTTGACTGGTA 3099692 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTT 77271 |||||||| ||||| ||||||| ||||| ||| | | ||| ||| |||| || | Sbjct 3099693 GAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTACGTAAACC--GTGCTCTGCAATCT 3099750 Query 77272 TATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATT 77331 | |||||||| | ||| | ||| ||||| || ||| || | ||| | || |||| Sbjct 3099751 TTTCTTTTAGTTCAGACCAGTTCCATAGATCGGATGGTGTTACGTTCCACATGTCATATT 3099810 Query 77332 GTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG 77391 ||| ||| ||||| ||| ||||| | ||||||||||| | |||| | || || Sbjct 3099811 GTAATTCTCCCTTACTTGCAGGGGATCCCTCGTATGTTTCATATGTTCCTAATTCTTTAG 3099870 Query 77392 CTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 77451 | | ||| ||||| ||||| || | | || || ||||| || || | || | Sbjct 3099871 CCAATTCGCAACTTCTCTCCAAAGCAGCATGGTAGATCGTTTCAAAGATTTGAACGTTCA 3099930 Query 77452 GATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATC 77511 | ||||||| ||| || || | || | || || |||||||| | | Sbjct 3099931 ATTTGCGTGCTTCGGGTGAATCGAAGGGCATACCCAAGATCATGAATGCATCTGCAAGAC 3099990 Query 77512 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAG 77571 | | ||||| ||||| ||||| | || | | | || || | |||||| | | Sbjct 3099991 CGTTGACTCCGATACCGATAGGACGGTGACGCATGTTAGATCTGCGTGCTTCTTCGACTG 3100050 Query 77572 GATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCT 77631 | |||||||| || || |||||||| || | || | | | ||||| | || | | Sbjct 3100051 GGTAATAATTGATATCAATAATTTTGTTCAAGTTACCACAGATCACTTTGGCAACTGCGT 3100110 Query 77632 TTAGTTTAAGAAAATCAAA--TCTTCCATCTATAACAAACAT--GTT--CAAAGCTATAG 77685 || || |||||| | |||| | | ||| | ||| |||||| || | Sbjct 3100111 GTAACTTCTTGAAATCATAAGTCTTTGTTGCAGGGTCAACGTAGGTTGGCAAAGCAATCG 3100170 Query 77686 ATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACAT 77744 | || | ||| || || || || |||| || || || |||| || || || || || Sbjct 3100171 AAGCCAAATTGCACACGGCAACTTCATCAG-GTGCACAGTATTCAATAATTTCTGTGCAC 3100229 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 | ||| ||||| || |||| ||| | |||||| || ||| | || || || Sbjct 3100230 AAGTTAGAGTTCTTGATGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGCTGCATCT 3100289 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864 || || | || || || | || |||||| | || ||||| | ||||| | ||| | Sbjct 3100290 TTGTACAACATGAATGGGTTACCAGTTTCAGTTTGAGATTCAAGAATAGCATACCACA-- 3100347 Query 77865 ACTCTAG--CTTTTATCATAGATTTGTATC-GCCTCTCTCTTTCATATTGAGTA-TATAG 77920 ||| | | |||| ||| | | |||| |||| || |||| || || | || || Sbjct 3100348 ACTTTTGTGCTTTGATCTTCTTTACATATCTGCCTTGCT-TTTCGTAA-GACTCGTAAAG 3100405 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAA 77980 ||||||||| || || || |||| |||| |||||| |||| || ||||||||||| Sbjct 3100406 TTTTTCAAATTCTTCACCGTAACAATCAGCCAAACCAGGGGATTCGTTGGGGCACATCAA 3100465 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 |||| ||||||| || | ||| || ||||| || | || || |||||||||||| Sbjct 3100466 GCACCATTCACCATTTTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAGAGCATA 3100525 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 ||||| || || | | | |||||| ||||| ||| || | ||| | || || Sbjct 3100526 GAATAGTTCACGTGCACGAACTTCTTCTTTTCCGTGATTTTTGCGTAAATCCAAGAATTC 3100585 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 | | ||| |||||||||||||| | || | || | | | || |||| || ||||| Sbjct 3100586 AAACACATCTGAATGCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTCTTGTTACC 3100645 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 ||| ||||| | ||| | || || | ||| | || | |||||| || | |||||||| Sbjct 3100646 TCCTTGATCAACATAACGAGCAGTTGTGTTAAATACACGCAACATAGGTACGATACCGTT 3100705 Query 78221 AGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT 78280 | |||||| ||||| || | ||| || ||| || ||||||| || |||| || Sbjct 3100706 ACTTGTTCCGTTTGTACCTGCAATGTATGATCCTGTTCCGCGAATGTTGTGAATGTTTAA 3100765 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 || || || ||||| |||| || || | || ||| ||| | |||||| || ||||| Sbjct 3100766 TCCGATACCACCTGCACTCTTGGAAATCATTGCACAAATTTTGAGTGTATCATAAATACC 3100825 Query 78341 CTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 78400 || || ||||| ||||| || | || || |||||||| | ||| Sbjct 3100826 ATCAATGGAATCATCTTTCATGGAAACCAAGAAGCATGAGGACATTTGTGGTCTTGGAGT 3100885 Query 78401 TCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTA 78460 || ||||| || | || || |||||||| ||||| | |||||| | || ||||| Sbjct 3100886 ACCAGCATTGAAAAGGGTTGGTGATGCATGTGTAAAGTACTTTTCACTCAAAAGGTTGTA 3100945 Query 78461 TGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520 ||||||||| || | || | || | ||||| || || || |||||||||||||| Sbjct 3100946 TGTTTCAATTGCAGCATCAACATCTTCTCCGTGAATACCAACGGCAACACGCATCAACAT 3101005 Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 ||| || ||||||||| | || ||| || ||| | ||||||| ||| | || Sbjct 3101006 ATGTTGTGGTCTTTCAGCAACTTTTCCATTGATACGCAAAAGGTATGATCGTTCTAGGGT 3101065 Query 78581 TTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTT 78639 || |||||||| |||| || || ||| || | || ||||| || |||| | || || Sbjct 3101066 CTTGAAACCAAAGAAGTTATAGTGGAAA-TCACGATCATAAATGATTGCAGAGTCTAATT 3101124 Score = 228 bits (252), Expect = 1e-54 Identities = 581/865 (67%), Gaps = 22/865 (3%) Strand=Plus/Minus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 || ||||| ||| ||||| | || |||||| || || ||||| || || || Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAA-ATCCTAA 47959 || || || ||||| |||| ||||| || |||||| || |||| | || || Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAAA 1007938 Query 47960 TTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCAT 48019 | ||| || | ||| ||| |||||| || ||| ||||| || | ||||| Sbjct 1007937 GCCACCAAT-AGACGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTCAT 1007879 Query 48020 TCCTAT-AAGTTTAACTGGTAGAGCCTCCGT-AAGAAACTCTTGTTCGATAGTGACAGCA 48077 ||| || ||||| | ||||| ||| || || |||||||| ||||||||| | |||||| Sbjct 1007878 TCCGATTAAGTTGCA-TGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACAGCT 1007821 Query 48078 TCCACTATTATCGATGTT-ACCGTTTCCTCACTTG-GTGGATACAACAAATGTTTAAACA 48135 || || ||| |||| || || || | | | | ||| |||||| | |||| Sbjct 1007820 TCTGTGATAATCT-TGTTCACTGTATCAGGATGAGCGCGCTTACG-CAAATGGCTGAACA 1007763 Query 48136 TTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195 |||||||| |||||| || | |||||||||||| || || ||||| || || |||| Sbjct 1007762 ACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATG 1007703 Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAA 48255 | | ||||||||| | |||||| || |||||||| || || ||||| || ||| | Sbjct 1007702 TCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGA 1007643 Query 48256 AGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT 48315 |||| || ||||| ||||| ||||| ||| | | || | | |||| |||| Sbjct 1007642 AGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGT 1007583 Query 48316 ---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 |||||| | |||||||||| ||||| | || || || |||||||| |||| Sbjct 1007582 CAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAG 1007523 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 ||| || | || | || || || | ||| ||||| || || | | | Sbjct 1007522 CATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGT 1007463 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 | |||| |||||||| ||||| || || || || || || || ||||| ||||||| Sbjct 1007462 AAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTG 1007403 Query 48493 -TGATCTGTAC--CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCAC 48549 || | || || ||||| | |||||||| |||| || ||||| || || |||||| Sbjct 1007402 CTGCT-TGAACTTCTCCG--CTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAG 1007346 Query 48550 TAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTAT 48609 ||| ||||| ||||| || || || || |||| ||||||| ||| || | Sbjct 1007345 AAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGT 1007286 Query 48610 T---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 | ||| || | | |||||| || | ||| | ||||| || ||||| || || || | Sbjct 1007285 TGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTT 1007226 Query 48667 CTGCTTTTTTATACATATTCCATAT 48691 |||||||||| ||||| | ||| || Sbjct 1007225 CTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668296365120