Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 376 4e-99 >seq2 Length=3834998 Score = 376 bits (416), Expect = 4e-99 Identities = 1209/1848 (65%), Gaps = 41/1848 (2%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || ||| ||||||||| || || | || || |||| || ||||||||||||| Sbjct 3099279 GCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTTAATCCTTTCTTCCATCCGTAGAAG 3099338 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 ||||| ||||| | || | | | || || || ||| || |||| |||||| Sbjct 3099339 TGCATACTTGTCAATTGACCAAATGTAGGTGCGCTTAAATGGATGTTCAAACTTTGACTT 3099398 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 || ||||| ||||| | ||| || ||||| | || || | |||||| |||||| Sbjct 3099399 TGGCAAATGAATGCTCCACGATCGGCTGCCATATCAATGATTGCTTTTTGACTGATTTCC 3099458 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTGTA---TTTTGAATGGAT 75634 |||| || ||| | | | ||||||||||||||||| || | |||||||| ||| Sbjct 3099459 CAAACGGTCTTGTACAATCTTTTGATATCATCTGGAATTCCTGGAACGTTTTGAATTGAT 3099518 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCC-ACAATTTTCTCTCGGTTAA 75693 || |||| || || ||| | ||||| || | ||| || || || || | | | Sbjct 3099519 CCACCATGAGCAATGATTCTGTTCTTCAT----TGTTTCTGACCATAGTC-CTTGTTCCA 3099573 Query 75694 A-ACTCTAAGGAGATGA----GGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGA 75748 | | || | | || | || ||||||| ||| |||||||| | || || | | Sbjct 3099574 CCAATGTACGTA-ATAACCATGGGTTAACAACTTGGAATTCTCCTGCTAACACACGCCTT 3099632 Query 75749 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTT 75808 ||||| || || ||| | ||||| | |||||||| ||| ||||||||| || Sbjct 3099633 GTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCATTGAATCCTAAAATTTGACTGGTA 3099692 Query 75809 GAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTT 75866 |||||||| ||||| ||||||| ||||| ||| | | ||| ||| |||| || | Sbjct 3099693 GAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTACGTAAACC--GTGCTCTGCAATCT 3099750 Query 75867 TATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATT 75926 | |||||||| | ||| | ||| ||||| |||||| || | ||| | || |||| Sbjct 3099751 TTTCTTTTAGTTCAGACCAGTTCCATAGATCGGATGGTGTTACGTTCCACATGTCATATT 3099810 Query 75927 GTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAG 75986 ||| ||| || || ||| ||||| | |||||||| || || || | || || Sbjct 3099811 GTAATTCTCCCTTACTTGCAGGGGATCCCTCGTATGTTTCATATGTTCCTAATTCTTTAG 3099870 Query 75987 CTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAA 76046 | | ||||||||| ||| || ||| | | || || ||||| || || | || | Sbjct 3099871 CCAATTCGCAACTTCTCTCCAAAGCAGCATGGTAGATCGTTTCAAAGATTTGAACGTTCA 3099930 Query 76047 GATCTTGCG--CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAG 76104 || ||||| |||| | ||| || || | || | || ||||||||||| || Sbjct 3099931 -AT-TTGCGTGCTTCGGGTGAATCGAAGGGCATACCCAAGATCATGAATGCATCTGCAAG 3099988 Query 76105 TCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAAT 76164 || | ||||| ||||| ||||| | || | | | || || | |||||| | Sbjct 3099989 ACCGTTGACTCCGATACCGATAGGACGGTGACGCATGTTAGATCTGCGTGCTTCTTCGAC 3100048 Query 76165 AGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT-ACTTTAACCACGT 76223 ||||||||||| ||||| |||||||| || | || | ||| | ||||| | || Sbjct 3100049 TGGGTAATAATTGATATCAATAATTTTGTTCAAGTTACC-ACAGATCACTTTGGCAACTG 3100107 Query 76224 CCTTTAGTTTGAGAAAATCAAA--TTTTCCATCTATCACAAACATA--TTA--AGAGCTA 76277 | | || || |||||| | | || | | ||| || || | ||| | Sbjct 3100108 CGTGTAACTTCTTGAAATCATAAGTCTTTGTTGCAGGGTCAACGTAGGTTGGCAAAGCAA 3100167 Query 76278 TAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA-TATTGTATTATCTCCGTG 76336 | || || | ||| || ||||| || |||| || | || |||| || || || ||| Sbjct 3100168 TCGAAGCCAAATTGCACACGGCAACTTCATCAGG-TGCACAGTATTCAATAATTTCTGTG 3100226 Query 76337 CATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAG 76396 || | ||| |||||| || || | ||| | |||||| || ||| |||| || Sbjct 3100227 CACAAGTTAGAGTTCTTGATGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGCTGCA 3100286 Query 76397 TCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAG 76456 || || || | | || || | ||||||||| | || ||||| | ||||| | ||| Sbjct 3100287 TCTTTGTACAACATGAATGGGTTACCAGTTTCAGTTTGAGATTCAAGAATAGCATACCAC 3100346 Query 76457 ACGACTCTAG--CTTTTATTATAGATTTGTATC-GCTTCTCTCTTTCATATTGTGTATAT 76513 | ||| | | |||| || | | |||| || | || |||| || || Sbjct 3100347 A--ACTTTTGTGCTTTGATCTTCTTTACATATCTGCCTTGCT-TTTCGTAAGACTCGTAA 3100403 Query 76514 AACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATC 76573 | ||||||||| || || || |||| |||||||||| |||| || || |||||| Sbjct 3100404 AGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAACCAGGGGATTCGTTGGGGCACATC 3100463 Query 76574 AATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCA 76633 || |||| ||||||| || | ||| || ||||| || | || || |||||||||||| Sbjct 3100464 AAGCACCATTCACCATTTTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAGAGCA 3100523 Query 76634 ATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAAC 76693 ||||| || || | | | |||||| ||||| ||| || | ||| | ||| Sbjct 3100524 TAGAATAGTTCACGTGCACGAACTTCTTCTTTTCCGTGATTTTTGCGTAAATCCAAGAAT 3100583 Query 76694 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTA 76753 || | | ||| |||||||||||||| | || | || | | ||||||||| || ||| Sbjct 3100584 TCAAACACATCTGAATGCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTCTTGTTA 3100643 Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | |||||| || | || ||| Sbjct 3100644 CCTCCTTGATCAACATAACGAGCAGTTGTGTTAAATACACGCAACATAGGTACGATACCG 3100703 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||| ||| || ||||| || | ||| || ||| | | ||||| || ||| | Sbjct 3100704 TTACTTGTTCCGTTTGTACCTGCAATGTATGATCCTGTTCCGCGAATGTTGTGAATGTTT 3100763 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || ||||| | || || || | ||||| ||| | ||| ||||| || Sbjct 3100764 AATCCGATACCACCTGCACTCTTGGAAATCATTGCACAAATTTTGAGTGTATCATAAATA 3100823 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 76993 || || || |||||| ||||| || | || || |||||||| | | Sbjct 3100824 CCATCAATGGAATCATCTTTCATGGAAACCAAGAAGCATGAGGACATTTGTGGTCTTGGA 3100883 Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || || |||||||| || || | |||||| | || ||| Sbjct 3100884 GTACCAGCATTGAAAAGGGTTGGTGATGCATGTGTAAAGTACTTTTCACTCAAAAGGTTG 3100943 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || | ||| | ||||| || || || |||||||||||| Sbjct 3100944 TATGTTTCAATTGCAGCATCAACATCTTCTCCGTGAATACCAACGGCAACACGCATCAAC 3101003 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 ||||| || |||| ||| || || ||| || ||| | ||||||| ||| | Sbjct 3101004 ATATGTTGTGGTCTTTCAGCAACTTTTCCATTGATACGCAAAAGGTATGATCGTTCTAGG 3101063 Query 77174 GTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCTTTCGTAAATAAT 77220 || || |||||||| |||| || || ||| || | || ||||| || Sbjct 3101064 GTCTTGAAACCAAAGAAGTTATAGTGGAAA-TCACGATCATAAATGAT 3101110 Score = 228 bits (252), Expect = 1e-54 Identities = 572/860 (67%), Gaps = 12/860 (1%) Strand=Plus/Minus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 || ||||| ||| |||||| | || |||||| || || ||||| || || || Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA-ATCCTAA 46448 || || || ||||| |||| || || || || |||| || |||| | || || Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAAA 1007938 Query 46449 TTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCAT 46508 | ||| || | ||| ||| |||||| || || ||||| || | ||||| Sbjct 1007937 GCCACCAAT-AGACGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTCAT 1007879 Query 46509 TCCTATGAGTTTGACCGGTAGAGCCTCCGT-AAGAAACTCTTGTTCAATAGTGACAGCAT 46567 ||| || | ||| |||| ||| || || |||||||| |||||| || | |||||| | Sbjct 1007878 TCCGATTAAGTTGCATGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACAGCTT 1007820 Query 46568 CCGATATTATCGATGTT-ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATT 46626 | | || ||| |||| ||||| || | | | | |||||| | |||| Sbjct 1007819 CTGTGATAATCT-TGTTCACTGTATCAGGATGAGCGCGCTTACGCAAATGGCTGAACAAC 1007761 Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 |||||||| |||||| || | ||||||||||| || || ||||| || || ||||| Sbjct 1007760 AAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGTC 1007701 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | || ||||| | ||||||||| |||||||| || ||| ||||| || ||| ||| Sbjct 1007700 AAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAAG 1007641 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC---ATCATTA 46803 || || ||||| || || || || ||||| | | || | | |||| | | | Sbjct 1007640 AAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTCA 1007581 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 ||||||| || | |||||||| |||||| | || || || |||||||| |||||| Sbjct 1007580 GAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGCA 1007521 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 | || | || | || |||| || | |||||||| || || | | || Sbjct 1007520 TCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTAA 1007461 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 ||||||| ||||||||||| || || || || || || || ||||||||||| | Sbjct 1007460 GTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGCT 1007401 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 || || ||| | |||||||| ||| || ||||| || || |||||| ||| Sbjct 1007400 GCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGCG 1007341 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT---C 47100 ||||| |||||||| || || || |||| ||| | | ||| || || | Sbjct 1007340 GCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTTGTCC 1007281 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 || || | | |||||| || | ||| | ||||| || |||||||| || || |||||| Sbjct 1007280 CAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGCT 1007221 Query 47161 TTTTTATACATATTCCATAT 47180 ||||| ||||| | ||| || Sbjct 1007220 TTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933883122560