Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 1e-13 seq3 89.7 1e-12 >seq1 Length=6968282 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| |||||||||||||| || || ||||| | || ||||| | Sbjct 6897779 CAAG-TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCGTCTTCCA 6897721 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| ||||| | || || ||||| | | ||| ||||| || ||||| | Sbjct 6897720 ATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGA 6897661 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | || || || || ||||| ||||| || || | Sbjct 6897660 TCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATTGTCTTAC 6897601 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || |||| ||||| Sbjct 6897600 CAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || | |||||| || ||||||||||||||||| || |||||||| |||||| Sbjct 595537 AGGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCT 595478 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || ||||| | | || ||||| | | ||||||||||| | Sbjct 595477 TCCAATTGCTTT--CCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGT 595420 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || ||||| | || | |||| || ||| || ||||| || || | Sbjct 595419 CTTGGATCTTAGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGG 595360 Query 152071 TTTTGCCCGT 152080 | || || || Sbjct 595359 TCTTACCTGT 595350 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || ||||||||||||||||| || ||||| | || ||||| | ||| || Sbjct 6898453 GTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTCCAATTGTTTACCT 6898394 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | || ||||| | || ||| ||||| || |||||||| || |||| Sbjct 6898393 GCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTGTCTTGAATCTTGGCTTTG 6898334 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| ||| || ||||| | || || || || || || | || Sbjct 6898333 ACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGTCTTTCCTGTCAATGTT 6898274 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 6898273 TTGACAAAGATTTGCAT 6898257 >seq3 Length=3165745 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||||||||| |||||||| |||||||||||||| || || | || |||||| Sbjct 2529668 ACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTCTTCT 2529609 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| || || ||||| | | || ||||| | | || ||||| || || ||| Sbjct 2529608 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATCCTGA 2529549 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || |||||| | || | | || || || || || | ||||||||||| Sbjct 2529548 ATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATAGTTTTT 2529489 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | ||||| || |||| ||||| Sbjct 2529488 CCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819942566918