Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 176 9e-39 seq3 170 4e-37 seq2 87.8 4e-12 >seq1 Length=6968282 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | |||| || || || ||| |||||||||||||| ||||| Sbjct 6898483 CCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCC 6898424 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || ||||| || || | |||||| || ||||||||||||||||||||||| ||| Sbjct 6898423 AAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGG 6898364 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || |||||||| ||||| ||||| || | || || ||||| |||| ||| ||| Sbjct 6898363 ATACCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACT 6898304 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || ||||| || || || || || ||||| Sbjct 6898303 TCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 168 bits (186), Expect = 1e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| | |||| || | || |||||| || |||||||| ||||| Sbjct 6898028 ACCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGC 6897969 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| || || || | |||||| || ||||||||||||||||||||||| || Sbjct 6897968 CAATGTGCGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGG 6897909 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGC-TTCGA 283050 ||||| || |||||||||||||| ||||| ||| | || ||||||| || || ||||| Sbjct 6897908 GATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTRTCAATAGTGT-CGCTGCTTTCGA 6897850 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || ||||| ||||| || || | ||||| || || || ||||| Sbjct 6897849 CTTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | ||||| |||||| ||| ||||||||||||||||||||||| Sbjct 6898256 ACCACCACGGAGACGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGC 6898197 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| || || || | ||| || || || || || | |||||||||||| || Sbjct 6898196 CAATGTGCGTCCGTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGG 6898137 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||||||||| ||||| || |||| || || || |||||| Sbjct 6898136 AATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGAC 6898077 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| |||||||| || | ||||| || || || ||||| Sbjct 6898076 TTCTAGTGTGATTGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | ||| || |||||||||||||||||||| Sbjct 6897800 ACCACCACGGAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGC 6897741 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| || || || | ||| || |||||||||||||| | ||||||||| || Sbjct 6897740 CAAAGTGCGACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGG 6897681 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| || |||||||||||||| ||||| || | || ||||| || || | ||| || Sbjct 6897680 GATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAAC 6897621 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || |||||||| ||||| ||||| || || || ||||| Sbjct 6897620 CTCAAGGGTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282869 TGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC 282928 || ||||||||| || || | |||| || || ||| ||| |||||||||||||| || Sbjct 5660978 TGCACCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATC 5661037 Query 282929 AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988 ||| | || || ||||| || | ||| || || |||||||| |||||||||||||| Sbjct 5661038 AGCCAAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGG 5661097 Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 |||||||| ||||||||||| |||||||| || || | || ||||| || | ||| Sbjct 5661098 TGGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTC 5661157 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || |||||||| | || || || || || ||||| Sbjct 5661158 AACCTCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 ||||| |||| || || || ||| |||||||||||||| ||||| | || | |||| Sbjct 595540 CGAAGGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCA 595481 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 || || | ||| || || ||||||||||||||||||||||| ||||| || |||||| Sbjct 595480 TCTTCCAATTGCTTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTG 595421 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||||||||| || || ||| | ||||| ||||| || | || || || || ||||| Sbjct 595420 TCTTGGATCTTAGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATG 595361 Query 283065 GTCTTACCCGT 283075 |||||||| || Sbjct 595360 GTCTTACCTGT 595350 >seq3 Length=3165745 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||| ||| | || ||||| | |||||||||||||| |||||||| || || Sbjct 2529686 CCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCC 2529627 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || || |||| |||||| || ||||||||||||||||||||||| ||| Sbjct 2529626 AATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGA 2529567 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || || || || ||||| ||||| ||| ||||||| || || || | ||| || Sbjct 2529566 ATACCTTCTTTATCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACC 2529507 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || || || |||||||| ||||| || || || ||||| Sbjct 2529506 TCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | | | || ||||| | |||||||| |||||||| ||||| || || Sbjct 2529459 ACCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGC 2529400 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | ||| || || |||||||| | ||||||||| || || Sbjct 2529399 CAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGG 2529340 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||| ||||| || || ||| | || || || ||||||| ||| || Sbjct 2529339 AATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAAC 2529280 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||||||||| || |||||||| || || || || ||||| Sbjct 2529279 CTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 >seq2 Length=3834998 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 315715 TCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGA 315774 || || |||| ||||| || || ||||| | |||||||||||| || | ||||| Sbjct 1997338 TCACGATCCAAGAAGTTAGTGGGTTCATCCAAAACGATGACGTGAGGACGACGCCATGTG 1997397 Query 315775 GCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGA 315834 || || | | |||| ||| | ||||| |||||||||| ||||| ||| |||| ||| Sbjct 1997398 GCAGCAGCCAAGACGACCTTGACCTTTTGACCACCAGACAAACCACGCATGTGAGAGTGA 1997457 Query 315835 GTGGTAAATTCTGGGTCAAGGCC 315857 | ||| ||||| || ||||| || Sbjct 1997458 GAGGTGAATTCAGGTTCAAGACC 1997480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738422141932