Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-48 >seq2 Length=3834998 Score = 206 bits (228), Expect = 3e-48 Identities = 554/834 (66%), Gaps = 21/834 (3%) Strand=Plus/Minus Query 23209 ACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT 23268 || ||||| ||| ||||| |||| | | || || || || ||||| || ||| Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 23269 GATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--A 23326 || || || ||||| |||| ||||| || | | ||| ||| | |||| | | | | Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGC--CTTTTCGTTACCCA 1007940 Query 23327 ATTCCTTTAAAAGCCTATCTGCTACA-AATTCAATATATTGACACATCAAATCATAGTTT 23385 | || || || | ||| || ||| |||||||| |||||||||||||| | |||| Sbjct 1007939 AAGCCACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTTC 1007881 Query 23386 ATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCA 23445 || || |||| || ||| | |||||| |||||| || ||| || || ||||| Sbjct 1007880 ATTCCGATTAAGTTGCATGGTAAAGCATCAGTTAAGAAACTTTGTTCGATTGAGACAGCT 1007821 Query 23446 TCTTTAATTAT-TTGAACAATAACTTCTTCACTAGGTGGATATTTT---AAATACTTAAA 23501 ||| | || || ||| || || ||| | | | || |||| | || Sbjct 1007820 TCTGTGATAATCTTGTTCA----CTGTATCAGGATGAGCGCGCTTACGCAAATGGCTGAA 1007765 Query 23502 CAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561 ||| |||||||| |||||| |||| |||||||| || || ||||||||||| || || Sbjct 1007764 CAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAA 1007705 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGA 23621 ||| || || ||||| ||||| || || || | ||| || || || ||||| || Sbjct 1007704 TGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACT 1007645 Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA 23681 ||||| ||||| ||||| || ||||| || || | |||| | ||||||| || | Sbjct 1007644 GAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTT 1007585 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTC-AATTGTTTCAA 23740 ||||||||||| ||| || ||||| ||||| ||| || ||| ||||||||||| Sbjct 1007584 GTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACG-ACTGGAATTGTTTCAA 1007526 Query 23741 TTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAAC 23800 | || | || | || || ||| || || ||||||||||| | ||| Sbjct 1007525 TAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAG 1007466 Query 23801 TATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTT 23860 || |||| || ||||| ||||| || || || || ||||| || ||||| |||| Sbjct 1007465 AGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTT 1007406 Query 23861 CAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCAC 23920 | | |||||| || |||| || | || ||||| || || ||||||||| Sbjct 1007405 CTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAG 1007346 Query 23921 TAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AATTTT 23979 ||| |||||||| || | ||| | || ||||| | ||| | || | | || || Sbjct 1007345 AAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTCGTTCAACTTG 1007287 Query 23980 TT---CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 || |||||| | | |||||| || ||||||| || || | ||||| ||| Sbjct 1007286 TTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAA 1007233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487621921200