Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 136 3e-27 seq1 131 1e-25 >seq3 Length=3165745 Score = 136 bits (150), Expect = 3e-27 Identities = 177/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 44097 ATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGA 44156 || ||| |||| ||| || | || | ||| || || ||||| ||||| || ||||| | Sbjct 2529700 ATCTTTGTTTCCCTCCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAA 2529641 Query 44157 TGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCT 44216 ||||||||||||| | | || |||| || | || || || |||||||||||||| | Sbjct 2529640 TGTTGTAATCGGCCAATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTT 2529581 Query 44217 GCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTG 44275 | || |||| || | |||||| || ||| ||||| |||| | ||| | || || Sbjct 2529580 GTTGGTCTGGTGGAATACCTTCTTTATCCTGAATCTT-GGCTTTGACGTTATCGATTGTA 2529522 Query 44276 TCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 || | ||||||||||||| ||||| || |||||||| | ||||| || ||||||||| Sbjct 2529521 TCAGATGATTCCACCTCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGC 2529462 Query 44336 AT 44337 || Sbjct 2529461 AT 2529460 Score = 125 bits (138), Expect = 5e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 2529465 TTGCATACCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTA 2529406 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| | | || | || |||| ||||| || |||||||| | ||| || ||||| Sbjct 2529405 ATCGGCCAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATC 2529346 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||| || || ||||| ||| | | | ||||| || | || Sbjct 2529345 TGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGA 2529286 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| || ||||||||||| || | || || || ||||||||||| Sbjct 2529285 TTCAACCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 >seq1 Length=6968282 Score = 131 bits (144), Expect = 1e-25 Identities = 173/237 (73%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | |||||||| |||||| ||| |||||||||||||||||| Sbjct 6897806 TTGCATACCACCACGGAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTA 6897747 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || | ||| |||| |||| ||||| |||||||||||||| | || || || Sbjct 6897746 GTCAGCCAAAGTGCGACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTC 6897687 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGC 44280 || || | |||||| || || ||||| |||| || ||| | || || || | Sbjct 6897686 TGGTGGGATACCTTCTTTGTCTTGGATCTT-GGCTTTGACATTGT--CAATAGTATCAGA 6897630 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| ||||| | ||||| ||||| || || | |||||| || ||||||||||| Sbjct 6897629 GGATTCAACCTCAAGGGTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 113 bits (124), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | || | |||||||| ||| | || |||||||||||||||||||| | Sbjct 6898485 TTCCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAG 6898426 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | | || |||| |||| || || || |||||||||||||| || || |||| | Sbjct 6898425 CCAAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCG 6898366 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATT 44285 | | |||||| || || ||||| |||| || ||| | || ||||||| |||| Sbjct 6898365 GGATACCTTCTTTGTCTTGAATCTT-GGCTTTGACATTGT--CAATCGTGTCGGAAGATT 6898309 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || ||||||||||| || | || || || ||||||||||| Sbjct 6898308 CAACTTCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| ||| | ||| |||||||||||||||||||| || | ||| | || Sbjct 5660996 CAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATC 5661055 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| ||||| || |||||||| ||||| || || |||| || | ||||||||| || Sbjct 5661056 TTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTC 5661115 Query 44245 CGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| | || || | || || ||| ||||| ||||| | || || | Sbjct 5661116 TTGAATCTT-TGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTG 5661174 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || ||||| ||||| || || || ||||||||| || Sbjct 5661175 TTTTACCCGTAAGGGTTTTTACAAAAATTTGCATGGTG 5661212 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| ||| || || || || || |||||||| Sbjct 6898034 TTGCATACCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTA 6897975 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || | | ||| |||| |||| || || || |||||||||||||| || || || Sbjct 6897974 ATCAGCCAATGTGCGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTC 6897915 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 || || | |||||| || || ||||| |||| | ||| | || |||||| | Sbjct 6897914 TGGTGGGATACCTTCTTTGTCTTGGATCTT-GGCTTTGACGTTRTCAATAGTGTCGCTGC 6897856 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || |||||||| || || ||||| || || |||||||| Sbjct 6897855 TTTCGACTTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990145531786