Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 150 4e-31 seq1 147 5e-30 >seq3 Length=3165745 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || ||||| |||||||| | ||||| ||| || || Sbjct 2529235 CAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCGGAT 2529294 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||| ||||||||||| || || || || || ||| Sbjct 2529295 ACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAACAA 2529354 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || || | |||||||| | || | |||||||| || || Sbjct 2529355 CGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAATATC 2529414 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||| ||| ||||| ||||| ||||||||| Sbjct 2529415 CAAAAGGAAAGCACACTCCATCTCGTTTTGAGA 2529447 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || |||||||| || ||| | ||||||||| || || Sbjct 2529463 CAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCTGAT 2529522 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| ||||||||||| |||||||| || || || ||||| ||| Sbjct 2529523 ACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAACAA 2529582 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||| ||| | || | |||||||| ||| | Sbjct 2529583 CGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAACATT 2529642 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||| || || ||||| |||||| Sbjct 2529643 CAAAAAGAAAGCACTCTTCATCTCGTTTTG 2529672 >seq1 Length=6968282 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || |||||||| || ||||| || || || |||||| ||| Sbjct 6897804 CAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGCGAC 6897863 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 6897864 ACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAA 6897923 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||| ||| | || | || ||||| ||| | Sbjct 6897924 CGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAACATT 6897983 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || |||||||| ||||| || | || ||| | ||| Sbjct 6897984 CAGAAAGAATCTACACTCCACTTGGTCTTGCGCCTC 6898019 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | |||||||| |||||||| | || || ||| || ||| Sbjct 6898260 CAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCCGAC 6898319 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| |||||||| ||||||||||| ||||| || ||||| ||| Sbjct 6898320 ACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAACAA 6898379 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||| || | ||| | || ||||| ||| || Sbjct 6898380 CGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAACATC 6898439 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || |||| |||| Sbjct 6898440 CAAAAGGAATCTACCTTGCA-CTTG 6898463 Score = 131 bits (144), Expect = 4e-25 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 |||||||| || ||||| || || || ||||| |||||||||||||| ||| ||| Sbjct 5661205 CAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAA---TCAAAC 5661149 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || || || || || || ||||||||| ||||| ||||| || || || ||||| Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 5661089 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| | ||||| || || || || | |||||||| | ||| | || ||||| ||| Sbjct 5661088 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAAC 5661029 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||||| ||||| || |||| | || ||| | ||| Sbjct 5661028 ATCCAAAAGGAATCCACCTTGCACTTGGTCTTGCGTCTC 5660990 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || || ||||| ||||| ||| ||| || Sbjct 6897576 CAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCTGAT 6897635 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 6897636 ACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAA 6897695 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || || | ||||| || | ||| | || || || ||| || Sbjct 6897696 AGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAACATC 6897755 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || ||||| || | || ||| | ||| Sbjct 6897756 CAAAAGGAGTCCACACTTCACTTGGTGTTGCGTCTC 6897791 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || ||||| || || || |||||| || Sbjct 6898032 CAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGTGAT 6898091 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| || ||||||||||| || || || ||||| ||| Sbjct 6898092 ACAATTGATAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAACAA 6898151 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || || | ||||| ||| | || | || || || ||| || Sbjct 6898152 CGTCTCATTTTCGCTGGTAAGCAATTGGAAGACGGACGCACATTGGCTGACTACAACATC 6898211 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||||||| || || | ||| | || ||| | ||| Sbjct 6898212 CAAAAAGAGTCCACCTTACATTTGGTATTGCGTCTC 6898247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730305477252