Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3259 123 5e-23 >seq3259 Length=9191 Score = 123 bits (136), Expect = 5e-23 Identities = 317/477 (66%), Gaps = 12/477 (3%) Strand=Plus/Plus Query 281540 GTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAAT 281599 ||| || ||||| || | ||||||||| | || || | | | ||| ||||||||||| Sbjct 5004 GTTTTCAACGATATCCATAGGATTATAATTTGGTATATCTGAACTCCATCCGGTTCCAAT 5063 Query 281600 ACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAAT 281659 |||||||| |||||||| || | |||| | | ||||||||| ||||||||||| || Sbjct 5064 TCCACTTGAGCCATTTACTAAGACCATCGGTAAGACAGGTACATACCATTCTGGTTCGAT 5123 Query 281660 TTTATCACCATCATCATACAAATACTTCAGAAGGTTATCATCT---GTATCGACGAAAAC 281716 || | | ||||| ||| ||| || || | | | ||||||| | || || || Sbjct 5124 TTGAGCTCCATCGTCAGTCAAGTAATTTAAGACATGATCATCTTGAGGTGGGAAGATCAC 5183 Query 281717 CTGTCGCGTCTTAGGGTTCAGT-TTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTAC 281775 | |||| |||| | || || ||||||||||||||| || ||||||| Sbjct 5184 CCTGGTAATCTT----TTCAATATTGGTAAAGATATACCTTGCAGAGGCTGCATCTTTAC 5239 Query 281776 CACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCC 281835 |||| | || | || || || || | || | | | || ||||||||||| | Sbjct 5240 CACCATTGGCTCTTGTACCGAATTGTCCATTAGGTGAAAGCACATTGATGTTATTGCTTC 5299 Query 281836 CGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGAT 281895 |||| | | || || || ||| || || ||| || ||||| |||| Sbjct 5300 CGACAAAGTTTTGTGCAAGAGCGACAATCGTTTGTGTAAGACTCTGTTCCCCGTGATGAT 5359 Query 281896 AGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGT 281955 | || ||||||||| ||||| | || || ||||| || | || | | |||| | Sbjct 5360 AAGCTGAATGTTCGGCACAGTAACCTCCCAATTGAGCTACTTTAATCTCCGCTTTCAATT 5419 Query 281956 TGCGTTTGAAAGC--GCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAAC 282010 | | |||| |||| |||| |||| || ||||||||| ||| ||||| || ||||| Sbjct 5420 TCCTTTTG-AAGCAAGCAA-ATAAAACCTTTCGTTGACCAGGTTTGAAGCCGTCAAC 5474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057631230418490