Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq7247 96.9 3e-15 >seq7247 Length=24577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||||||| | || |||||||| || |||||| ||||| Sbjct 7954 GACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGGGAAACAATTGGAA 7895 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || | ||| || ||||||||||| || |||||||| |||||||| | ||| Sbjct 7894 GATGGTCGCACACTC--GCTGATTACAATATCCAAAAGGAATCAACTCTTCATCTTGTGC 7837 Query 29173 TACGATTACGAGGAGG 29188 | ||||| || ||||| Sbjct 7836 TCCGATTGCGTGGAGG 7821 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || ||| || ||| | ||||||||||| || |||||||| ||| Sbjct 8533 GATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGAAAACAACTCGAA 8474 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| || ||||||||||||| || ||||||||||| |||||||| |||| Sbjct 8473 GATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTTCATTTGGT 8418 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||| ||||| |||| |||||||| || |||||| |||| Sbjct 7092 GATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGTAAACAATTGGAG 7033 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | ||||||||||| ||||| ||||| |||||||||||| |||| || Sbjct 7032 GATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTCTTG 6973 Query 29175 CGATTACGAGGAGG 29188 ||| | || || || Sbjct 6972 CGACTGCGTGGTGG 6959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428261751033065