Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq7247 105 5e-18 >seq7247 Length=24577 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25056 TTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAG 25115 ||||| ||||| ||||| ||| |||| || | | || || | | | | ||||| Sbjct 7164 TTGACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAACGTCAAG 7105 Query 25116 CAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGC 25175 || ||| ||||| ||||| | || ||| ||||| |||| |||||||| || Sbjct 7104 GCCAAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGT 7045 Query 25176 AAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTT 25235 ||||||||||| ||| ||| | ||||||||||| ||||||||||| ||||||||| Sbjct 7044 AAACAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTT 6985 Query 25236 CACATGGTGTTACGATTACGAGGAGG 25261 ||| |||| || ||| | || || || Sbjct 6984 CACTTGGTCTTGCGACTGCGTGGTGG 6959 Score = 105 bits (116), Expect = 5e-18 Identities = 106/136 (78%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||||||| | || |||||||| || |||||||||||| Sbjct 7954 GACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGGGAAACAATTGGAA 7895 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 ||| || | ||| || ||||||||||| ||||||||||| |||||||| | ||| Sbjct 7894 GATGGTCGCACACTC--GCTGATTACAATATCCAAAAGGAATCAACTCTTCATCTTGTGC 7837 Query 25246 TACGATTACGAGGAGG 25261 | ||||| || ||||| Sbjct 7836 TCCGATTGCGTGGAGG 7821 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||| || ||| | ||||||||||| || |||||| | ||| Sbjct 8533 GATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGAAAACAACTCGAA 8474 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || ||||||||||||| || || |||||||| |||||||| |||| Sbjct 8473 GATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTTCATTTGGT 8418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410725591327322