Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4953 89.7 4e-13 >seq4953 Length=13799 Score = 89.7 bits (98), Expect = 4e-13 Identities = 200/293 (68%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 ||||||||||||| || | |||||| || || | ||||| || | | ||| | | Sbjct 7929 ACATAAAACTGACAAAACATATGACAAGGCGGAAGGGCCATCTTGGATAGATCAGATGGA 7870 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGT-ATGGTATTAAT--T 97347 |||||||||| | | ||| | | ||| | | ||||||||| | || | | || Sbjct 7869 TTCCAAGCACTTAGGATCATCCGACGATCCG-TAGGTTTGTGTTTGATCTTCTCGATACA 7811 Query 97348 ATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTT-GATATTC 97406 |||| || |||||||| || ||||| || ||||| | ||| | | || | || Sbjct 7810 ATCT--TTCAATTGATCTACTCCTTCACCGGTATAATCAT-CTTTGGCCGTTCGGTAGCT 7754 Query 97407 TGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATC 97466 || || ||||| | ||| || |||||||| | ||||| || |||||||| ||||||| Sbjct 7753 CGCACCGAAATGTCGCCACTGAAATCCATAGATCGGTCCTAGATCTCCTTCATCTCTATG 7694 Query 97467 ACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGT 97519 || || || | | |||| | | | | ||||||||| ||| |||||||| Sbjct 7693 ACCCAATCCGACACTTTCTAGAAAAGTTTTCGATCCATTTCCATTCCAAATGT 7641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346723887486110