Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7247 116 6e-21 >seq7247 Length=24577 Score = 116 bits (128), Expect = 6e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124560 CTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAA 124619 || || ||||| || || || | ||| ||||| | ||||| ||| ||| | || Sbjct 8605 CTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAG 8546 Query 124620 CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGA 124679 || |||||||||||||||||||| ||||| || || ||| | ||||| ||||| ||| Sbjct 8545 GCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGA 8486 Query 124680 AAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTG 124739 |||||| | || ||| | || || | | ||||| || || || || ||||| ||| | Sbjct 8485 AAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTT 8426 Query 124740 CATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| | ||| | || |||||||| Sbjct 8425 CATTTGGTACTTCGTCTGCGTGGTGGTAT 8397 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||| ||||| || ||||| || |||||| | | ||||| || ||||| Sbjct 7390 AAAATTCAAGATAAGGAAGGGATTCCACCGGACCAACAACGATTGATTTTCGCTGGAAAG 7331 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| |||||| |||| ||| | | ||||| ||||| || || ||||||||| | ||| Sbjct 7330 CAATTGGAGGATGGTCGCACACTTGCGGATTACAATATCCAGAAGGAATCAACTCTTCAT 7271 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || | ||| |||| ||||| || Sbjct 7270 CTTGTGCTCCGTCTACGTGGTGGAAT 7245 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| ||||| || ||||| || ||||| | || || |||||||| ||| Sbjct 7101 AAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGTAAA 7042 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| |||||| | |||||| | | ||||| || |||||||| || || ||| | || Sbjct 7041 CAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCAC 6982 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 ||||| || || | || |||||| Sbjct 6981 TTGGTCTTGCGACTGCGTGGTGGT 6958 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||| || || || ||||| ||||||||||||||| | |||||||| || || ||| Sbjct 7677 AAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGGGAAA 7618 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || || | || || ||| || || ||||||||||| || || || | ||| Sbjct 7617 CAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCTACAT 7558 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| | || |||||||| Sbjct 7557 TTGGTATTGCGTCTTCGTGGTGGTAT 7532 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||| ||||| || |||||||||||| | ||||| ||||| || || Sbjct 8250 AAGATTCAAGACAAAGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGGAAG 8191 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || |||| || | | || || || ||||| ||||| || ||| | || Sbjct 8190 CAACTTGAAGACGGTCGCACTCTCGCTGACTACAACATTCAGAAAGAGTCTACTCTCCAC 8131 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||| | || |||||||| Sbjct 8130 TTGGTTCTTCGTCTTCGTGGTGGTAT 8105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755321689366400