Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7247 102 7e-17 >seq7247 Length=24577 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | || ||| |||||||| | |||||||| |||||||||||||||||| Sbjct 6958 ACCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGC 7017 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || ||| |||||| | ||||| || || |||| || ||||| || || || || Sbjct 7018 AAGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGG 7077 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||| ||||| ||| ||| || || || | || | || |||| |||||| Sbjct 7078 GATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGAC 7137 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCA 118716 |||| ||| | || ||||| |||| Sbjct 7138 TTCGAGGGTGATGGTCTTGCCAGTCA 7163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||||||||||| ||||||||||| || | |||||| || || Sbjct 8126 ACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTGCGACCGTCTTCA 8185 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| ||||| || ||||| ||||| || ||||| |||||| | Sbjct 8186 AGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCTTTGTCTTGA 8245 Query 118650 ATTTT 118654 || || Sbjct 8246 ATCTT 8250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| || || | | ||| ||||| || | || ||||| |||||||| ||||| || | Sbjct 7533 TACCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAG 7592 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 || | || || || || |||||||| || ||| | || ||||| || ||||| || Sbjct 7593 CT-AGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGT 7651 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||||||||| ||||||| || || | |||| ||||| | ||| Sbjct 7652 GGGATACCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCG 7711 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||| | || || ||||| ||| Sbjct 7712 ACTTCCAAGGTAATAGTCTTACCGGTGAGA 7741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433755198618316