Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11248 91.5 1e-13 seq7247 89.7 5e-13 seq12155 87.8 2e-12 >seq11248 Length=18918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 || |||||| | |||||||| ||| ||||||| || ||||| || ||||||||||| Sbjct 4955 ATCTTTTGGCTCAAGAAACGTGGCTTGATGCCTGGTCTGACATTCTCAAACGAGTTGATC 5014 Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTG 58143 || || || || |||||||| || || ||||| || ||| | | ||||||| ||| Sbjct 5015 TCCCGTGATGAAGGTCTCCACACCGACTTTGCCTGTCTACTCTTCTCTCACCTTG 5069 >seq7247 Length=24577 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272 ||| || || ||||| || || | || |||||| | || |||| |||| | ||||| Sbjct 8027 TCTTACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAA 7968 Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332 | ||| ||||||||||||| | || || || || || ||||| || || ||||| Sbjct 7967 GGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGG 7908 Query 31333 CAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCT 31392 ||||| |||||||| | || | ||||| || || ||||| ||||| ||||| Sbjct 7907 GAAACAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCT 7848 Query 31393 TCATCTGGTACT 31404 |||||| || || Sbjct 7847 TCATCTTGTGCT 7836 >seq12155 Length=30793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/194 (72%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || ||| |||||||| |||| || ||| ||||||||| || ||| Sbjct 28105 GAGGTGTAAGGCTCAAAACATTCATTGAAACCCATGATTTGACTGGTCGAAGCAGTAGGC 28164 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCG--TGCTTTGAAATTTTACTCTTGAGCA 22619 |||||||| | || || |||||||||| |||| || || || ||| || || || | Sbjct 28165 ATCGGCGCAAGCAAAAGTGAGTTTCTCAGGCCGGTAGCCTT-AATCTTTTCT-TTCAG-A 28221 Query 22620 TCG-ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 ||| ||| |||||| ||||| || || || | |||||||||||||||| || | Sbjct 28222 TCGTCCCATGTCCACAGGTCGGAGGGTGTGAC---GCCCCACATATCGTATTGTAATTCT 28278 Query 22679 CCGCGACTCGCCGG 22692 || |||| || || Sbjct 28279 CCTTGACTAGCGGG 28292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || |||||||| |||||||| || || | | || |||||||||||||| || Sbjct 27505 TTGTCGACCGTAAACTGAATGGCGTTAGCTGCGGCCCTAGTACGAAGATAATACATCCCA 27564 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATC 22201 ||||||| |||| | ||||| || ||||| || ||| Sbjct 27565 GTCTTCAAACCCTTTTTCCATGCATAAAAGTGCATC 27600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445687148306160