Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7247 91.5 1e-13 >seq7247 Length=24577 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | ||||||||||| |||||||| || || Sbjct 8108 CCACCACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCG 8167 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || || || |||||| |||| |||||||| ||||| ||||| Sbjct 8168 AGAGTGCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGG 8227 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | || | | || | |||||||| || || || Sbjct 8228 ATACCCTCTTTGTC-TTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGAC 8286 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAA 139743 || | || | ||||| || ||||| Sbjct 8287 TTCGAGAGTGATGGTCTTACCAGTCAA 8313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || ||||||| |||||||| ||||||||||| |||||| | ||| | | Sbjct 6971 CGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCA 7030 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || | |||||||| ||| |||| || || || || || || || |||||||| || Sbjct 7031 TCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGGATGCCTTCCTTA 7090 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | || | | || | ||| || | | ||| || || | ||| | Sbjct 7091 TC-TTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGAT 7149 Query 139729 CGTCTTGCCGGTCAA 139743 |||||||| ||||| Sbjct 7150 GGTCTTGCCAGTCAA 7164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495975806021600