Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7247 98.7 7e-16 >seq7247 Length=24577 Score = 98.7 bits (108), Expect = 7e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| ||||| || || || |||||||||||| || | | | ||||| Sbjct 8418 ACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCG 8477 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || || | || | |||||| ||||| |||||| |||||||| || | Sbjct 8478 AGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGA 8537 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||||||| | ||| || || | ||| ||||| || Sbjct 8538 ATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTG 8597 Query 15335 CCTGTCAGA 15343 || || ||| Sbjct 8598 CCGGTAAGA 8606 Score = 82.4 bits (90), Expect = 6e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || || || |||||||| || | | | || || ||||| Sbjct 7271 ATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCCTCCAATTG 7330 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | ||||| ||||||||||| |||||| ||||| || || |||||| Sbjct 7331 CTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGGAATCCCTTCCTTATCTTGAATTTT 7390 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || || || || | ||| || || | || || |||||||| || Sbjct 7391 GGCCTTGACATTGTCAATAGTGTCCGAAGATTCGACTTCCAGTGTGATTGTTTTACCAGT 7450 Query 15340 CAG 15342 ||| Sbjct 7451 CAG 7453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362116418838843