Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7247 141 2e-28 >seq7247 Length=24577 Score = 141 bits (156), Expect = 2e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||||||||| || ||||||| ||||| | ||||||||| ||||| || ||| Sbjct 8138 GTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTGCGACCGTCTTCAAGTTGCTTCCCA 8197 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||||||||| || || ||||| || |||||||| || || Sbjct 8198 GCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCTTTGTCTTGAATCTTGGCCTTG 8257 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | || ||| | ||| || || || || || ||||||||||| Sbjct 8258 ACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGAGTGATGGTCTTACCAGT 8310 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | ||| | || ||||| ||||| || || || || | || || | || || Sbjct 8414 AAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATC 8473 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||||||||| ||||| || || | || || || || || || ||||||||||| Sbjct 8474 TTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATC 8533 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | ||||||| || ||| ||||| || || || || Sbjct 8534 TTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGT 8593 Query 104527 CTTACCAGTAAG 104538 ||| || ||||| Sbjct 8594 CTTGCCGGTAAG 8605 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||||| || || || || |||||||| ||||||| ||| || | |||||||| Sbjct 7552 TACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCTAGCGTACGTCCGTCTTC 7611 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || ||||| || || ||||| || | ||||||||||| || || || || || ||||| Sbjct 7612 CAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTGTCCTG 7671 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | || || | ||| || || | ||||||||||| Sbjct 7672 AATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGACTTCCAAGGTAATAGTCTT 7731 Query 104530 ACCAGTAAG 104538 ||| || || Sbjct 7732 ACCGGTGAG 7740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151188578150884