Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7247 105 6e-18 >seq7247 Length=24577 Score = 105 bits (116), Expect = 6e-18 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | |||||| | ||| | || | ||| ||||||||||| | || | Sbjct 7813 TTTGCATGCCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGT 7872 Query 94833 AATC-GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 |||| || ||||| || ||| |||| ||||| || ||||||| | | ||| | Sbjct 7873 AATCAGC---GAGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTT 7929 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 ||||||| ||||| ||||| ||||| | ||||| ||||||||| | ||| ||||||| Sbjct 7930 GATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAG 7989 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || || | ||| || ||||| || |||||| Sbjct 7990 ATGATTCAACCTCCAGCGTAATTGTTTTACCGGTAAGA 8027 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| |||||||| || | ||| |||||| || || ||| || Sbjct 8418 ACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCG 8477 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||||||| ||||||| | | |||||| ||||| |||||||||||||| || | | Sbjct 8478 AGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGA 8537 Query 94919 ATTTTTGCCTTGAC 94932 || || ||||| || Sbjct 8538 ATCTTGGCCTTCAC 8551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448211499428280