Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5647 105 1e-18 seq4713 102 1e-17 seq13468 93.3 7e-15 seq7671 87.8 3e-13 >seq5647 Length=14717 Score = 105 bits (116), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || |||||||| ||||| ||||| ||||| || |||||||| |||| || Sbjct 7624 AGATCT-TGCGTGATAACATTCAAGGTATCACTAAGCCTGCAATCCGTCGATTGGCACGA 7566 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | || || ||||||||| |||||||| | | || ||||| | || | |||| | ||| Sbjct 7565 AGAGGAGGTGTCAAGCGTATCTCTGGACTCATTTACGAAGAAACCCGCGGTGTTCTAAAG 7506 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||||||||| ||| || || | ||| | || ||||||||| Sbjct 7505 ATCTTCCTCGAGAATGTGATTCGAGATTCAGTCACATATACCGAG 7461 >seq4713 Length=11267 Score = 102 bits (112), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | ||||| ||||||||||| || ||||| || |||||||| ||||| || || Sbjct 2535 AGATCT-TGCGAGACAACATCCAAGGTATAACCAAACCTGCTATCCGACGTCTTGCCCGA 2593 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| ||||| ||| |||| || | | || ||||| | |||| |||| | || Sbjct 2594 AGAGGTGGTGTCAAACGTATCTCCGGTCTTATTTACGAAGAAACCCGTGGTGTTCTCAAA 2653 Query 16568 ATCTTCCTCAAGACCGTTATC 16588 |||||||| ||| ||||||| Sbjct 2654 ATCTTCCTTGAGAACGTTATC 2674 >seq13468 Length=11586 Score = 93.3 bits (102), Expect = 7e-15 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16440 GTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTC 16499 |||| || | | |||||| || ||||||||||||||||| || || ||||||||||| Sbjct 9463 GTCACCGTAAAATTCTTCGTGACAACATCCAAGGAATCACAAAACCTGCTATCCGTCGAT 9404 Query 16500 TGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATG 16559 |||| || | || || || ||||| |||| || ||| | |||||||||| ||| | || Sbjct 9403 TGGCACGAAGAGGAGGTGTGAAGCGAATCTCAGGTTTGATTTATGAAGAGACTCGAGGTG 9344 Query 16560 T 16560 | Sbjct 9343 T 9343 >seq7671 Length=5359 Score = 87.8 bits (96), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| |||||| |||||||||||||| ||||| || || || ||| | ||| | ||| | Sbjct 4697 AGAT-TCTTCGTGATAACATCCAAGGTATCACTAAACCTGCCATCAGACGTTTAGCTAGA 4755 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| |||||||| ||| |||| || ||| | ||||| |||| Sbjct 4756 CGTGGAGGAGTCAAACGTATCTCCGGTTTGATTTATGAGGAGA 4798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062195811539