Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq12271 109 9e-19 >seq12271 Length=8926 Score = 109 bits (120), Expect = 9e-19 Identities = 147/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 193968 TCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATC 194027 ||||||||| |||| || ||||| || |||||||| || | || | || ||||| Sbjct 1625 TCTCCAAGACGAGGAAGAACGTTTGTGACACGTAAGATCACCCGAGCAGTGGCTGAGATC 1684 Query 194028 TCTGTTGGATTACAGAAGATT--CTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGG 194085 | || || || | || ||||| ||||| || | ||| || || ||||||| Sbjct 1685 AGCTTAGGCTTGCA--ATCTTGCCTTTACCTTGGAAACTTGTCTGCCAAAAGAGATTGGG 1742 Query 194086 GACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATG 194145 | || || || ||||||||||||| |||||| |||||| ||||| |||| | |||| | Sbjct 1743 GTCATGCCAAAGATTATGTTGAAGGCATGTGGAGAATGTTACAACAAGATGTAGCCGAAG 1802 Query 194146 ATTATGTGATTGCTACAGGTGAA 194168 |||||||| | ||||| |||||| Sbjct 1803 ATTATGTGTTAGCTACTGGTGAA 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807411626779880