Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7247 93.3 4e-14 >seq7247 Length=24577 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||||| || ||||||| ||| |||||||||||||| ||||| || ||| Sbjct 7535 CCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCT 7594 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || ||||| || || ||| | || | ||| || || || || || Sbjct 7595 -AGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGG 7653 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| ||| || ||||| | || | || || | || |||| Sbjct 7654 GATACCCTCCTTGTC-CTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGA 7712 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGA 131214 || | ||||| || |||||||| ||| Sbjct 7713 CTTCCAAGGTAATAGTCTTACCGGTGAGA 7741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||| || || || | || |||||||||||||||||||||||| Sbjct 6959 CCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 7018 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||||| | || || ||||| |||||| ||||| ||||| || ||| Sbjct 7019 AGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGG 7078 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || || ||||| | || | ||||| | ||||||| Sbjct 7079 ATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGACT 7138 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || || || Sbjct 7139 TCGAGGGTGATGGTCTTGCCAGT 7161 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || ||||| | || || ||||| || |||||||||||| | Sbjct 8400 CCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCC 8459 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || || || || || |||| | ||| |||||||| || || Sbjct 8460 AGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGA 8519 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || || || ||| | | || | ||||||| || || | Sbjct 8520 ATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAACC 8579 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGA 131214 |||| ||| | ||| || ||||| ||| Sbjct 8580 TCGAGGGTGATGGTCTTGCCGGTAAGA 8606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471928882024320