Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7247 127 1e-24 >seq7247 Length=24577 Score = 127 bits (140), Expect = 1e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||||||| || ||| |||||||||||||||||| |||| Sbjct 7533 TACCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAG 7592 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | |||| |||| || | ||||| ||||| || || || ||||||||||| | | Sbjct 7593 CTAGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTG 7652 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| ||||||| ||| ||||| | || || || ||| | Sbjct 7653 GGATACCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGA 7712 Query 38269 CTTCTAATGTAATAGTTTTACCCGT 38293 |||| || |||||||| ||||| || Sbjct 7713 CTTCCAAGGTAATAGTCTTACCGGT 7737 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | ||| || | ||| | ||||||||| |||||||| ||||||||||||| Sbjct 7821 CCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCG 7880 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 7881 AGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGA 7940 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| ||||| ||| || || | || || || |||||| Sbjct 7941 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAACC 8000 Query 38271 TCTAATGTAATAGTTTTACCCGT 38293 || | ||||| |||||||| || Sbjct 8001 TCCAGCGTAATTGTTTTACCGGT 8023 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||||||||||||| ||||| || || |||||||| | Sbjct 8398 TACCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGG 8457 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || |||| | || || | ||||||||||||||| || || ||||| || || | | Sbjct 8458 CCAGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTG 8517 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || ||| || ||||||||| | | ||||| | ||||| Sbjct 8518 GAATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAA 8577 Query 38269 CTTCTAATGTAATAGTTTTACCCGT 38293 | || | || || || || || || Sbjct 8578 CCTCGAGGGTGATGGTCTTGCCGGT 8602 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/139 (75%), Gaps = 8/139 (6%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||||| ||||| |||||||| |||||||||||| |||||||| | Sbjct 6958 ACCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATC-GG 7016 Query 38150 CAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| ||||| || || |||||||| || ||||| ||||| || ||||| || | Sbjct 7017 CAA---GTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTG 7073 Query 38206 AGGGGACGCCTTCTTTGTC 38224 |||| |||||| || || Sbjct 7074 GTGGGATGCCTTCCTTATC 7092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334889139310313