Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7247 127 2e-24 >seq7247 Length=24577 Score = 127 bits (140), Expect = 2e-24 Identities = 156/210 (74%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---A 25077 |||| |||||| | |||||| | ||||| || || || |||||||| || || || | Sbjct 7452 TGACTGGTAAAACAATCACACTGGAAGTCGAATCTTCGGACACTATTGA--CAATGTCAA 7395 Query 25078 AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 || |||| ||| || || |||||||||||||| |||||||| || | ||||| || | Sbjct 7394 GGCCAAAATTCAA-GATAAGGAAGGGATTCCACCGGACCAACAACGATTGATTTTCGCTG 7336 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 | || ||||| || |||| |||||| | | ||||||||||| || || ||||| || | Sbjct 7335 GAAAGCAATTGGAGGATGGTCGCACACTTGCGGATTACAATATCCAGAAGGAATCAACTC 7276 Query 25198 TACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||| | ||||| | ||| | || |||| Sbjct 7275 TTCATCTTGTGCTCCGTCTACGTGGTGGAA 7246 Score = 120 bits (132), Expect = 3e-22 Identities = 141/188 (75%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAG 25079 |||||||| | || || | ||||| || ||||||||||| ||||| || || | | Sbjct 7737 ACCGGTAAGACTATTACCTTGGAAGTCGAATCGTCTGACACAATCGA--CAATGTCAAGG 7680 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 |||||| ||| ||||| || || || |||||||| ||||| || ||||||| ||||| Sbjct 7679 CAAAAATTCAG-GACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGGG 7621 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 ||||| | ||||| | || || | | || |||||||||||||| || ||||| ||| Sbjct 7620 AAACAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCTA 7561 Query 25200 CATTTAGT 25207 ||||| || Sbjct 7560 CATTTGGT 7553 Score = 118 bits (130), Expect = 9e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 ||||||||| | || || | || || || || |||||||| ||||| | ||| Sbjct 8023 ACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAAGGCC 7964 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| ||||| ||||| ||||| || || ||||| || | || ||||| || ||| Sbjct 7963 AAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGGGAAA 7904 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||||| ||||||| |||||| | | ||||||||||| ||||| ||||| || || ||| Sbjct 7903 CAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCTTCAT 7844 Query 25203 TTAGTGCT 25210 | ||||| Sbjct 7843 CTTGTGCT 7836 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 25019 TTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCAC 25074 |||||| || || ||||||| ||||||| ||||| || || || || || |||| Sbjct 7165 TTTGACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAACGTCA- 7107 Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134 | || || | ||| || || ||||| || ||||| ||||||||||| | || |||| Sbjct 7106 --AGGCCAAGATTCAA-GATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTG 7050 Query 25135 CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCA 25194 | || |||||||| || |||| || || | | ||||||||| |||||||| || || | Sbjct 7049 CAGGTAAACAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTA 6990 Query 25195 CGCTACATTTAGT 25207 | || || || || Sbjct 6989 CTCTTCACTTGGT 6977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433252885705745