Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7247 134 1e-26 >seq7247 Length=24577 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| || | || | ||||| ||| | | || || | ||| || |||| | Sbjct 7737 ACCGGTAAGACTATTACCTTGGAAGTCGAATCGTCTGACACAATCGACAATGTCAAGGCA 7678 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||| ||| Sbjct 7677 AAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGGGAAA 7618 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || || || | | || ||||| |||||||| || |||||| ||||| Sbjct 7617 CAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCTACAT 7558 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| | || || ||| Sbjct 7557 TTGGTATTGCGTCTTCGTGGTGGT 7534 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || ||| | |||||||| | ||| || | || Sbjct 8602 ACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAGGCC 8543 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||| || || ||||||||||| || || ||||||||||| |||||||| ||| Sbjct 8542 AAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGAAAA 8483 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || ||| || ||| | ||||||||||||| || || |||||||| | ||| Sbjct 8482 CAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTTCAT 8423 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| || ||| Sbjct 8422 TTGGTACTTCGTCTGCGTGGTGGT 8399 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||||||||| | || || || || ||| | | || ||| | ||| | |||| Sbjct 8023 ACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAAGGCC 7964 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || |||||||| || ||||| || |||||||||||||| || ||||| || ||| Sbjct 7963 AAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGGGAAA 7904 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || || ||| ||||| || | |||||||| || ||||| ||||| || | ||| Sbjct 7903 CAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCTTCAT 7844 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || | |||||||| ||||| Sbjct 7843 CTTGTGCTCCGATTGCGTGGAGG 7821 Score = 123 bits (136), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22239 TTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAA 22298 ||| || ||||| || ||||||| ||||| ||| || |||| || | ||| || |||| Sbjct 8314 TTTGACTGGTAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAA 8255 Query 22299 ACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 || ||||||||||| |||||||| || || ||||||||||||||||| ||||| || Sbjct 8254 GGCCAAGATTCAAGACAAAGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCTGG 8195 Query 22359 CAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCAT 22418 || || | || || ||||| || | || ||||||||||| ||||| || || | Sbjct 8194 GAAGCAACTTGAAGACGGTCGCACTCTCGCTGACTACAACATTCAGAAAGAGTCTACTCT 8135 Query 22419 ACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||| | || | || || ||| Sbjct 8134 CCACTTGGTTCTTCGTCTTCGTGGTGGT 8107 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22239 TTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAA 22298 ||| || || || || |||| || ||||| || | | ||||| | ||| | |||| Sbjct 7165 TTTGACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAACGTCAA 7106 Query 22299 ACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 || |||||||| ||||| || || ||||| || ||||| || || || ||||| || Sbjct 7105 GGCCAAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGG 7046 Query 22359 CAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCAT 22418 ||||| || |||||| || || | ||||||||||||||||||| || || || | Sbjct 7045 TAAACAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCT 6986 Query 22419 ACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || |||||| |||| || ||| Sbjct 6985 TCACTTGGTCTTGCGACTGCGTGGTGGT 6958 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || |||||||| |||| || ||||| ||| | | || || | ||| || |||| Sbjct 7450 ACTGGTAAAACAATCACACTGGAAGTCGAATCTTCGGACACTATTGACAATGTCAAGGCC 7391 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||| ||||| || |||||||| || |||||||| | || || || || || Sbjct 7390 AAAATTCAAGATAAGGAAGGGATTCCACCGGACCAACAACGATTGATTTTCGCTGGAAAG 7331 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || || |||||| ||||| | | |||||||| || || || ||||| || Sbjct 7330 CAATTGGAGGATGGTCGCACACTTGCGGATTACAATATCCAGAAGGAATCAAC 7278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419655243167995