Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq7247 113 4e-20 >seq7247 Length=24577 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || ||||| || || |||||||||||| Sbjct 8397 ATACCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCG 8456 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| |||||||| || || |||| ||||| || ||||| || Sbjct 8457 GCCAGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGT 8516 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| || | | |||| ||| |||| ||||| Sbjct 8517 GGAATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCA 8576 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362 || || | ||| | || |||||||| ||| Sbjct 8577 ACCTCGAGGGTGATGGTCTTGCCGGTAAGA 8606 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | ||||| ||||| ||||||||||| || Sbjct 8105 ATACCACCACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCA 8164 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| ||||||||||| || ||||| |||| ||||| ||||| || ||| Sbjct 8165 GCGAGAGTGCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGA 8224 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || |||||||| |||||| || | | |||| ||||||| ||||||| Sbjct 8225 GGGATACCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCG 8284 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || || | || | || || || |||| Sbjct 8285 ACTTCGAGAGTGATGGTCTTACCAGTCA 8312 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||| ||| || || || | ||||| || |||||||||||||||||| Sbjct 6958 ACCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGC 7017 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||| || | ||||||||| || |||| || ||||||||||| || || Sbjct 7018 AAGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGG 7077 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||| || || |||||| || | | |||| || || | || ||||| Sbjct 7078 GATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGAC 7137 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCA 114360 || | ||| | || ||||| |||| Sbjct 7138 TTCGAGGGTGATGGTCTTGCCAGTCA 7163 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| | || | || | ||| | || ||||| ||||| || |||||||| Sbjct 7818 ATGCCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCA 7877 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||| | |||||| ||||| |||| ||||| ||||| || || Sbjct 7878 GCGAGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGG 7937 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| || || || | | || | |||||| | ||||| Sbjct 7938 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCA 7997 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362 || |||| || | ||||| ||||| ||| Sbjct 7998 ACCTCCAGCGTAATTGTTTTACCGGTAAGA 8027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420061572721476