Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7247 134 3e-26 >seq7247 Length=24577 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| | ||||| ||| ||| || ||||| || || ||||| Sbjct 8400 CCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCC 8459 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||||||||| || ||||| ||||| || || ||| Sbjct 8460 AGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGA 8519 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || || || || ||||| || || || | |||| ||||| || Sbjct 8520 ATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAACC 8579 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| ||||| ||||| ||| Sbjct 8580 TCGAGGGTGATGGTCTTGCCGGTAAGA 8606 Score = 132 bits (146), Expect = 1e-25 Identities = 160/215 (74%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || | || || || ||||||| || ||| ||||||||||| || | Sbjct 7817 CATG-CCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAAT 7875 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||| ||||| || ||||| |||||||| || || ||||||||||| ||||| || Sbjct 7876 CAGCGAGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTG---AT 7932 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || ||||| || ||||||||||| || || ||||| || || | || | Sbjct 7933 CTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATG 7992 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||| || || ||||| || || || ||||| ||| Sbjct 7993 ATTCAACCTCCAGCGTAATTGTTTTACCGGTAAGA 8027 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | ||| | ||| | ||| || ||||| ||||| ||||| || Sbjct 7535 CCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCT 7594 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| ||||||||||| | ||||| || ||||| || ||||| |||||| | |||| Sbjct 7595 AGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGG 7654 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| ||||| || || || || || || | || |||||| ||| Sbjct 7655 ATACCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGACT 7714 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || | || || ||||| ||||| ||| Sbjct 7715 TCCAAGGTAATAGTCTTACCGGTGAGA 7741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179439428998194