Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7247 104 2e-17 >seq7247 Length=24577 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| ||||||||||| || |||| ||||| |||||||||| ||||| || Sbjct 8138 GTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTGCGACCGTCTTCAAGTTGCTTCCCA 8197 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || || || || || ||||| || || ||||| ||||| || || ||| Sbjct 8198 GCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCTTTGTCTTGAATCTTGGCCTTG 8257 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 ||| || | ||| || || || ||||| | ||| | |||||| || |||||| Sbjct 8258 ACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGAGTGATGGTCTTACCAGTCAAA 8314 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || | ||||| || ||||| || || ||||||||||| || Sbjct 8399 ACCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 8458 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| || || || |||||| | || || || |||||||| || || Sbjct 8459 CAGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGG 8518 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| || || ||| ||| || | ||||| | || || Sbjct 8519 AATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAAC 8578 Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419 || | || | |||||||||||| Sbjct 8579 CTCGAGGGTGATGGTCTTGCCGGT 8602 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||||||||||||||| || | || ||| | || || | || Sbjct 6983 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCATCCTCCAATTGT 7042 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || ||||| ||||| || || || ||||| || ||||| || || Sbjct 7043 TTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGGATGCCTTCCTTATCTTGAATCTTG 7102 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | |||||| | || ||||| | || | ||||||||| ||| Sbjct 7103 GCCTTGACGTTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGATGGTCTTGCCAGTC 7162 Query 64421 AAA 64423 ||| Sbjct 7163 AAA 7165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499555969400120