Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7247 96.9 3e-15 seq12155 82.4 8e-11 >seq7247 Length=24577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | |||||| || ||||||| | | |||||||||||||| |||||||| ||| Sbjct 7535 CCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCT 7594 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||| || || ||||| |||| | || ||||| ||||| || || || Sbjct 7595 -AGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGG 7653 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || ||||| ||| |||||| || |||| || | ||||| | ||| || Sbjct 7654 GATACCCTCCTTGTC-CTGAATTTTTGCCTTGACATTG-TCGATTGTGTCAGACGATTCG 7711 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGA 138594 || || | || | || ||||| || ||| Sbjct 7712 ACTTCCAAGGTAATAGTCTTACCGGTGAGA 7741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | |||||||||||||||||||| ||| Sbjct 6959 CCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 7018 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||| | ||||||||| | | ||||||| ||||||||||| || || Sbjct 7019 AGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGG 7078 Query 138508 ATACCTTCTTTGTC 138521 || ||||| || || Sbjct 7079 ATGCCTTCCTTATC 7092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | || ||||| || |||||||| ||| | Sbjct 8400 CCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCC 8459 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || ||||||||||| |||| | |||| ||||| || ||||| || || Sbjct 8460 AGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGA 8519 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||||||||| || ||| | || | || |||| || | ||| |||| || || | Sbjct 8520 ATACCTTCTTTATC-TTGAATCTTGGCCTTCACATTG-TCAATGGTATCGGAAGATTCAA 8577 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGA 138594 |||||| || | || || || || ||| Sbjct 8578 CCTCGAGGGTGATGGTCTTGCCGGTAAGA 8606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | ||||| || |||||||||||||| Sbjct 8108 CCACCACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCG 8167 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || ||||| || || | | |||| ||||| ||||| || ||||| Sbjct 8168 AGAGTGCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGG 8227 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| ||| | || | || |||| || | ||||||| || || | Sbjct 8228 ATACCCTCTTTGTC-TTGAATCTTGGCCTTGACATTG-TCAATTGTGTCGGAGGATTCGA 8285 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 | |||| || | || |||||||||| Sbjct 8286 CTTCGAGAGTGATGGTCTTACCAGTCA 8312 >seq12155 Length=30793 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423 ||||| | ||| ||| |||||| || | ||||| || ||||| |||| ||| || Sbjct 29649 CATCAAGTTGTAAGTTCTGATGGCTCGCTCAACATCATTCCCATGAATTCCGACCGCAAC 29708 Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCC 154483 |||||||||||||| || || ||||| || |||| ||||| || |||||| || Sbjct 29709 ACGCATGAGCATGTGTTGTGGCCGTTCAGCAACTCGATTGTTGATACGCAAGAGGTAGGA 29768 Query 154484 ATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCAT 154533 || || || ||| ||||||| || ||||| | ||| || | |||| Sbjct 29769 CCGCTCAAGCGTCTTGAAACCGAAGTAGTTGTAGTTAAAGTCACGGTCAT 29818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496174170748560