Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7247 89.7 4e-13 >seq7247 Length=24577 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| || || || || ||||| ||||| || ||||| |||||||||||| Sbjct 6959 CCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 7018 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | | || || |||||||| || || | || | ||||||||||| ||| Sbjct 7019 AGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGG 7078 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 || |||||||| || ||| ||| || || | || || ||||| | || || || Sbjct 7079 ATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATC-CGATGACTCGAC 7137 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCA 15154 || | ||| ||||| || || |||| Sbjct 7138 TTCGAGGGTGATGGTCTTGCCAGTCA 7163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || ||||||| | || | |||||| || || || ||||| || |||||||| Sbjct 7819 TGCCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAG 7878 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| |||||||| ||||| | |||| ||| ||||| || | Sbjct 7879 CGAGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGG 7938 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| |||||| || || | || || || || ||| | Sbjct 7939 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAA 7998 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 | || | ||||| |||||||| || ||| Sbjct 7999 CCTCCAGCGTAATTGTTTTACCGGTAAGA 8027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357330048665555