Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7247 107 2e-18 >seq7247 Length=24577 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||||||||| || ||||| |||||||||||||| || | Sbjct 7535 CCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCT 7594 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || |||||||| || ||| | || | || || ||||| || || Sbjct 7595 AGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGG 7654 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| || ||||| | |||| ||||| | ||||| Sbjct 7655 ATACCCTCCTTGTCC-TGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGAC 7713 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGA 127093 ||| | ||| | || || ||||| ||| Sbjct 7714 TTCCAAGGTAATAGTCTTACCGGTGAGA 7741 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||| ||||| || | |||||||| |||||||| ||||||||| | Sbjct 6959 CCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 7018 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||| || || |||| | |||||| || || || || Sbjct 7019 AGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGG 7078 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| || || || ||||| ||||| | | || |||| |||||| Sbjct 7079 ATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGT-CAATTGTATCCGATGACTCGAC 7137 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 ||||| ||| | || ||||| |||| Sbjct 7138 TTCGAGGGTGATGGTCTTGCCAGTCA 7163 Score = 98.7 bits (108), Expect = 9e-16 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || ||||| | ||| | ||| | || || || ||||| ||||||||||| | Sbjct 7821 CCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCG 7880 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||||| ||||| |||||| || || ||||| || || Sbjct 7881 AGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGA 7940 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTC 127053 ||||| ||||||||| |||||| ||||| |||| |||| |||||| Sbjct 7941 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTG-TCGATGGTGTC 7987 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | ||| | ||| | || || || || || ||||||||||| | Sbjct 7247 TCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGC 7306 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| || | || ||||||||| | |||||||| || || || || || Sbjct 7307 AAGTGTGCGACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGG 7366 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || ||||| ||||| | || | ||||||| | ||||| Sbjct 7367 AATCCCTTCCTTATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGAC 7426 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAG 127092 ||| | || | ||||| || ||||| Sbjct 7427 TTCCAGTGTGATTGTTTTACCAGTCAG 7453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475416261901520