Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7247 134 1e-26 >seq7247 Length=24577 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| ||||| || ||||||||||| |||||||| ||||| Sbjct 7245 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCC 7304 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||||||| ||||| ||| | ||||||||||| |||||||| Sbjct 7305 GCAAGTGTGCGACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGT 7364 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| |||||||||||||| |||| || | ||||| ||||| ||| Sbjct 7365 GGAATCCCTTCCTTATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCG 7424 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 ||||| || || | ||||| || || || Sbjct 7425 ACTTCCAGTGTGATTGTTTTACCAGTCAG 7453 Score = 113 bits (124), Expect = 4e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || |||||||||||||||||||| ||||| || || | ||| || Sbjct 7838 CACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCGAGTGTGCGACCATCTTC 7897 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||||||| || || | |||| ||||| || || || ||||||||||| || || || Sbjct 7898 CAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCCTG 7957 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||| |||| || | || | |||||| || || || || || || |||| |||| Sbjct 7958 GATTTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGATTCAACCTCCAGCGTAATTGTTT 8016 Query 45310 TGCCGGTTAGA 45320 | ||||| ||| Sbjct 8017 TACCGGTAAGA 8027 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || |||||||| ||||| || |||||| | ||| ||| || | ||| Sbjct 8423 ATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCGAGTTG 8482 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| || | || | ||||||||||| || ||||| ||||||||||||||||| || Sbjct 8483 TTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTT 8542 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | ||| |||||||| || || ||||| || | || |||||||| Sbjct 8543 GGCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGT 8602 Query 45317 TAGA 45320 ||| Sbjct 8603 AAGA 8606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | ||| || | || || || || |||||||| || || |||||| Sbjct 6959 CCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 7018 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||||||||| ||||| | || | ||| || ||||| || || Sbjct 7019 AGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGG 7078 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| ||||||||||| || |||| || | || | || || || |||||||| Sbjct 7079 ATGCCTTCCTTATCTTGAATCTTGGCCTTGA-CGTTGTCAATTGTATCCGATGACTCGAC 7137 Query 45293 TTCGAGAGTAACCGTTTTGCCGGT 45316 |||||| || | || ||||| || Sbjct 7138 TTCGAGGGTGATGGTCTTGCCAGT 7161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451922839481080