Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7247 105 2e-17 seq1882 96.9 8e-15 >seq7247 Length=24577 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || || || ||||||||||| | ||||||||||| | || Sbjct 7541 CGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCTAGCGTA 7600 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||||||| || |||||||| || ||||| || || || || || || Sbjct 7601 CGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGGATACCC 7660 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| ||| ||| || |||| ||||| | | ||| || ||||| Sbjct 7661 TCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGACTTCCAAG 7720 Query 199589 GTGATCGTCTTACCCGTGAGA 199609 || || |||||||| |||||| Sbjct 7721 GTAATAGTCTTACCGGTGAGA 7741 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| ||||| || || | |||||||||||| | ||| Sbjct 8114 CGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTG 8173 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || ||||| || || ||||| ||||| || || || ||| || || Sbjct 8174 CGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCC 8233 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| ||| || || | ||||| | | ||| || || | Sbjct 8234 TCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGA 8293 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| |||||||| || Sbjct 8294 GTGATGGTCTTACCAGT 8310 >seq1882 Length=1960 Score = 96.9 bits (106), Expect = 8e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||| || || || ||||||||||||| |||||||||||||||||| Sbjct 1748 CGAAGACGAAGGACAAGATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTG 1807 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGC 199494 | |||||||| ||||| |||||||| Sbjct 1808 CGACCATCTTCGAGCTGTTTTCCGGC 1833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178706762537941