Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7247 87.8 2e-12 >seq7247 Length=24577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 |||||| | ||||| ||||| || || | || ||||| || || |||| ||| || || Sbjct 7678 AAAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGGGAA 7619 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||| |||| || || || |||||||| || |||||||| | || || || Sbjct 7618 ACAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCTACA 7559 Query 38447 TTTGGTGCTGCGT 38459 |||||| ||||| Sbjct 7558 TTTGGTATTGCGT 7546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||||| ||||| || || |||||| | || ||||| || || || | || || ||| Sbjct 7963 AAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGGGAAA 7904 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || |||| || | ||||| ||| || ||||| |||||||||||| | || || ||| Sbjct 7903 CAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCTTCAT 7844 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 | ||||| || ||| | || ||| Sbjct 7843 CTTGTGCTCCGATTGCGTGGAGGC 7820 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 || || ||||| ||||||||| |||| || || | |||| | | | | | | || Sbjct 8605 CTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAG 8546 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || || | || ||||| || ||||| | ||||| || || || || | || || Sbjct 8545 GCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGA 8486 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 ||||| || || || | || ||||| ||| ||||||||||| |||||| | || || Sbjct 8485 AAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTT 8426 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || ||| || | || || Sbjct 8425 CATTTGGTACTTCGTCTGCGTGGTGG 8400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500083875528320