Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7247 122 3e-22 seq3259 84.2 9e-11 >seq7247 Length=24577 Score = 122 bits (134), Expect = 3e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 |||||||||||||| || || || || || ||||| || || | ||||| | | || Sbjct 7453 CTGACTGGTAAAACAATCACACTGGAAGTCGAATCTTCGGACACTATTGACAATGTCAAG 7394 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 |||||||||||||||||||| ||||| || || |||||||| || |||||| | || Sbjct 7393 GCCAAAATTCAAGATAAGGAAGGGATTCCACCGGACCAACAACGATTGATTTTCGCTGGA 7334 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || ||| | || ||||| | || | |||||||| ||||| | ||||| |||| ||| Sbjct 7333 AAGCAATTGGAGGATGGTCGCACACTTGCGGATTACAATATCCAGAAGGAATCAACTCTT 7274 Query 391251 CA 391252 || Sbjct 7273 CA 7272 Score = 116 bits (128), Expect = 1e-20 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || |||||||| ||||| || || |||||||||||||| | ||| || | || Sbjct 8026 CTTACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAAG 7967 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 ||||| || || |||||||| ||||| || |||||||||||| | || || | ||| Sbjct 7966 GCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGGG 7907 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||| | |||||||| | || | || ||||| ||||| | ||||| |||| ||| Sbjct 7906 AAACAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCTT 7847 Query 391251 CA 391252 || Sbjct 7846 CA 7845 Score = 114 bits (126), Expect = 5e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || ||||| |||||||| | || || ||||| ||||| | || || | | || Sbjct 7740 CTCACCGGTAAGACTATTACCTTGGAAGTCGAATCGTCTGACACAATCGACAATGTCAAG 7681 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 ||||||||| || ||||| || || || ||||||||||||||| | |||||| | ||| Sbjct 7680 GCAAAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGGG 7621 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 ||||| || ||||| ||| | || | || || || |||||| | ||||| | || || Sbjct 7620 AAACAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCTA 7561 Query 391251 CACTTAGTATT 391261 || || ||||| Sbjct 7560 CATTTGGTATT 7550 Score = 107 bits (118), Expect = 8e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || || || || || || |||||||| || |||| |||||| | | || Sbjct 8605 CTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAG 8546 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || ||||||||||| ||||| ||||| || || || |||||| | || || | || Sbjct 8545 GCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGA 8486 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||||| ||||||||| | || |||| ||||| || || | ||||| | || ||| Sbjct 8485 AAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTT 8426 Query 391251 CACTTAGTA 391259 || || ||| Sbjct 8425 CATTTGGTA 8417 Score = 104 bits (114), Expect = 9e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 ||||||| || || || || || || || || ||||| |||| ||||| | || Sbjct 7163 TGACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAACGTCAAGG 7104 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || ||||||||||||||||| || || || || ||||| || |||| || |||| | Sbjct 7103 CCAAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGTA 7044 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 ||||| | || ||||| |||| | || ||||| || ||| | ||||| | || |||| Sbjct 7043 AACAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTC 6984 Query 391252 ACTTAGTATTAAGACTG 391268 |||| || || ||||| Sbjct 6983 ACTTGGTCTTGCGACTG 6967 Score = 104 bits (114), Expect = 9e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 |||||||||| || || ||||| || || ||||| || || | ||||| | | || Sbjct 8312 TGACTGGTAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGG 8253 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || |||||||| || || || || |||||||||||||||||| | || || | |||| Sbjct 8252 CCAAGATTCAAGACAAAGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGGA 8193 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 | ||||||||||| || | ||| | || || || || ||| | || || | || || | Sbjct 8192 AGCAACTTGAAGACGGTCGCACTCTCGCTGACTACAACATTCAGAAAGAGTCTACTCTCC 8133 Query 391252 ACTTAGT 391258 |||| || Sbjct 8132 ACTTGGT 8126 >seq3259 Length=9191 Score = 84.2 bits (92), Expect = 9e-11 Identities = 290/442 (66%), Gaps = 13/442 (3%) Strand=Plus/Minus Query 364566 ATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGA-GCAAA 364624 || ||||| | ||||| || || |||||| |||| |||| |||| | || || Sbjct 5486 ATACCATCGATGGTTGACGGCTTCAAACCTGGTCAACGAAAGGTTTTATTTGCTTGC--- 5430 Query 364625 TTTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTT-TGTATCTG 364683 || || |||| | |||| | | |||||||||||||| | ||||| ||| | | Sbjct 5429 TTCAAAAGGAA-ATTGAAAGCGGAGATTAAAGTAGCTCAATTGGGAGGTTACTGTGCC-G 5372 Query 364684 ACCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAATGGCAC 364743 | | ||||||||||||||| || ||| | | | | || | | | |||| Sbjct 5371 AACATTCAGCTTATCATCACGGGGAACAGAGTCTTACACAAACGATTGTCGCTCTTGCAC 5312 Query 364744 AAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGTC 364803 |||| ||||| ||||| ||||| | ||| | || ||| || |||||||| || | Sbjct 5311 AAAACTTTGTCGGAAGCAATAACATCAATGTGCTTTCACCTAATGGACAATTCGGTACAA 5252 Query 364804 GAGTAATGGGAGGTAAAGATTCTGCCAGCCCACGTTATATTTGGACCAAACTTGAAAA-A 364862 ||| | || ||||||||| | ||| || | ||||| | ||||| ||||||| | Sbjct 5251 GAGCCAATGGTGGTAAAGATGCAGCCTCTGCAAGGTATATCTTTACCAATATTGAAAAGA 5192 Query 364863 GTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAATGATGAT 364922 | |||| | | | || | ||||| ||| | |||||||| | | ||| ||| Sbjct 5191 TTACCAGGGTGA-TCTTCCCACCTCAAGATGATCATGTCTTAAATTACTTGACTGACGAT 5133 Query 364923 GGA--TTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAATG 364980 ||| | || | ||||| |||| ||| | ||| | | || ||| | |||||||||| Sbjct 5132 GGAGCTCAAA--TCGAACCAGAATGGTATGTACCTGTCTTACCGATGGTCTTAGTAAATG 5075 Query 364981 GAGCAACAGGCATTGGTACTGG 365002 | ||| || ||||| || || Sbjct 5074 GCTCAAGTGGAATTGGAACCGG 5053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975358360514084