Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq13844 107 1e-17 >seq13844 Length=20562 Score = 107 bits (118), Expect = 1e-17 Identities = 196/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| || |||||||||||||| ||||| | ||| | || | || ||| | || Sbjct 2992 ACGAGACGGTTGTCAAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCTTTGACC 2933 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || || |||| || ||| |||| |||||| ||| ||||| || | ||| Sbjct 2932 TCGAAGATACCCTCCTCAATAGTCAAGAGAGAGACATCAAAGGTACCACCTCCAAGATCG 2873 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || ||||| || | || || |||||||| || || | || ||| Sbjct 2872 AAGATGAGCACATTGCGCTCACCAACGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCA 2813 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || ||||| || || || | | || || ||||||| || || ||||| || Sbjct 2812 GCGGTAGGTTCGTTGATGATACGAAGAATGTTGAGACCAGAGATCAAACCGGCATCCTTG 2753 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 518301 |||||||||| || || || || || || ||||| || || | ||| Sbjct 2752 GTGGCTTGTCGCTGAGAGTCATTGAAGTAAGCAGGGACGGTGACAAC 2706 Score = 104 bits (114), Expect = 2e-16 Identities = 251/380 (66%), Gaps = 0/380 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| || || || ||||| |||||||||| |||||| |||||||| |||||||| || Sbjct 3876 GCAGAAACGTTGAGGATACCGTTGGCATCCACATCAAAGGTGACTTCGATTTGAGGAACA 3817 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | ||||||| || || || | | |||| | ||||| | || || || Sbjct 3816 CCGCGAGGAGCAGGAGGAATACCAGTGAGTTCAAATTTACCCAGGAGGTGGTTGTCCTTT 3757 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || |||||||||||||||| ||| || | || | ||| || || | || Sbjct 3756 GTACGAGCACGTTCACCCTCGAAAACTTGAATGTTGACACCGAGTTGGTTGTCGGTGTAG 3697 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 |||| ||| | | ||| | |||||||||||||||| ||| | | || Sbjct 3696 GTTGAGAATGTTTCACACTTTCTGTTGGGAATTGTTGTGTTTCGGGGAATGAGAGGAGTG 3637 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 | | |||||| || || || | |||||| || ||||| | ||||| | |||| || Sbjct 3636 AAGACACCACCGGCAGTCTCGATACCAAGCGAGAGAGGCGCAACATCCAAGAGGAGAAGG 3577 Query 517559 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | ||| || || ||| | ||| ||| ||||| || || | || ||||| || Sbjct 3576 TCTTGGGTCTTCTCGGAAGTATCACCGGAAAGGATAGCAGCCTGGACGGCGGCACCGTAG 3517 Query 517619 GCAACAGCTTCATCAGGATT 517638 || || || ||||| ||||| Sbjct 3516 GCGACGGCCTCATCGGGATT 3497 Score = 95.1 bits (104), Expect = 9e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 |||||| | || || || || |||| || ||| || || ||||| |||||| || Sbjct 2358 ACCAATGAGACGCTTGGCGTCGAAAACGGTGTTGTGGGGGTTCATTGCCACTTGATTCTT 2299 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| || || || |||| |||| | || || || | || || || || || || || Sbjct 2298 GGCGGCGTCACCGATCAACCGTTCAGAGTCAGTGAAAGCGACGTAAGAAGGTGTGGTACG 2239 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || || ||||| || ||||| |||||||| | |||| ||||||||||| |||||| Sbjct 2238 GTTTCCCTGATCGTTGGCAATGATTTCAACACGATCATTCTGCCATACACCAACACAAGA 2179 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | || ||||| | ||| ||||| | ||| Sbjct 2178 GTAGGTAGTTCCGAGATCGATACCGACAGC 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780116607889438