Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq13844 167 3e-36 seq11770 152 7e-32 seq3259 113 6e-20 seq14177 109 7e-19 seq12271 84.2 3e-11 >seq13844 Length=20562 Score = 167 bits (184), Expect = 3e-36 Identities = 236/329 (72%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 7404 CTTTCTTATGTTTACGTTTAAACTCT-TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 ||||||| | ||| || || ||||| ||| |||||| || ||| | || ||| Sbjct 3033 CTTTCTTGTTTTTGCGCTTGAACTCGGTCAC-GAAGTGGTTAACGAGACGGTTGTCAAAA 2975 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||||||||||||||| || || || || || |||||||| || |||||||| | ||| Sbjct 2974 TCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCTTTGACCTCGAAGATACCCTCCTCA 2915 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 || | || | || |||||||| |||||||| || || || || ||||| || || Sbjct 2914 ATAGTCAAGAGAGAGACATCAAAGGTACCACCTCCAAGATCGAAGATGAGCACATTGCGC 2855 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | | | ||||| || |||||||| ||||| || || || || ||||| || || Sbjct 2854 TCACCAACGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCAGCGGTAGGTTCGTTGATG 2795 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||||||| ||| || |||| || | ||||| || || |||||||| || || Sbjct 2794 ATACGAAGAATGTTGAGACCAGAGATCAAACCGGCATCCTTGGTGGCTTGTCGCTGAGAG 2735 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || ||||| || ||||| || || || Sbjct 2734 TCATTGAAGTAAGCAGGGACGGTGACAAC 2706 Score = 140 bits (154), Expect = 4e-28 Identities = 194/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 ||||| || || || ||||| ||||| || || |||| ||| || | || || ||||| Sbjct 3373 GGGATACGGGTGGAACCACCAACCAATACAATCTCATGCACATTGGCCTTGTCAATCTTG 3314 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 ||||||| | ||| |||||||| |||||| || | ||||||||| || || Sbjct 3313 GAGTCTCTCAACACTTTCTCGACAGGCTCCATAGTCTTTCTGAACAAGTCTTGGCAGAGC 3254 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || || ||||||| || || ||||| || || || ||| | | |||||| Sbjct 3253 TCCTCGAATCGGGCCCGGGTAAGAGACGTGTAGAAGTCGACACCCTCGAAAAGGGAATCA 3194 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 ||||| || | ||||| || | || || | |||||||| || ||||| || || ||| Sbjct 3193 ATTTCGATAGAGGTTTGAGCAGCGGATGAGAGAGTTCGCTTGGCACGCTCGCAAGCAGTT 3134 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || | || || | ||||| | |||||||| Sbjct 3133 CGAAGTCGTCGTACAGCACGAGCATTACCGGA 3102 Score = 129 bits (142), Expect = 7e-25 Identities = 176/245 (72%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 7900 CATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAA 7959 |||||||||||| || | || | || || | || || |||||||| || || || Sbjct 2394 CATATCGTCTTGAACATCCGCATCGGCGAATTTGCGACCAATGAGACGCTTGGCGTCGAA 2335 Query 7960 AACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 ||| ||||| | ||||||||| || ||| ||||| || ||||| ||||| | ||||| Sbjct 2334 AACGGTGTTGTGGGGGTTCATTGCCACTTGATTCTTGGCGGCGTCACCGATCAACCGTTC 2275 Query 8020 ATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAAT 8079 | || || || |||||||| || || || || || || || || ||||| ||||| Sbjct 2274 ---AGAGTCAGTGAAAGCGACGTAAGAAGGTGTGGTACGGTTTCCCTGATCGTTGGCAAT 2218 Query 8080 AATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAAT 8139 ||||| || || || || ||||| || || || || || || || ||||| | ||| || Sbjct 2217 GATTTCAACACGATCATTCTGCCATACACCAACACAAGAGTAGGTAGTTCCGAGATCGAT 2158 Query 8140 ACCGA 8144 ||||| Sbjct 2157 ACCGA 2153 Score = 96.9 bits (106), Expect = 4e-15 Identities = 307/468 (66%), Gaps = 10/468 (2%) Strand=Plus/Minus Query 6636 CCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTA 6695 |||| ||||| || || || || ||||||||| | || ||| || |||| | Sbjct 3929 CCTTGTCATTGGTGATGGTGATTCGGCTGGATTTACCAGTGGTCTTGTCGGAAGCAGAAA 3870 Query 6696 CATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCG 6755 | || | ||||| || ||||| ||||| || | || | ||||| || ||| | | Sbjct 3869 CGTTGAGGATACCGTTGGCATCCACATCAAAGGTGACTTCGATTTGAGGAACACCGCGAG 3810 Query 6756 GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCT 6815 | || | |||||||| || | |||||| |||| || | ||| ||| | | Sbjct 3809 GAGCAGGAGGAATACCAGTGAGTTCAAATTTACCCAGGAGGTGGTTGTCCTTTGTACGAG 3750 Query 6816 TACGTTCACCTTCATAGACTTTAAT--TGTCACCGCAGGTTGATTATCTTGTGCCG-TTG 6872 ||||||||| || | |||| ||| || ||||| |||| || || ||| | ||| Sbjct 3749 CACGTTCACCCTCGAAAACTTGAATGTTGACACCGA--GTTGGTTGTCG-GTGTAGGTTG 3693 Query 6873 AGAAGATTTGTT-CTTTCTTAGATGG-AATCGTCGTATTTCTCGGAATAACCGGGGTCAT 6930 |||| ||| |||||| | ||| ||| || || |||| ||||| | || || | Sbjct 3692 AGAATGTTTCACACTTTCT--GTTGGGAATTGTTGTGTTTCGGGGAATGAGAGGAGTGAA 3635 Query 6931 AATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC 6990 | |||||| ||| |||| ||||| || ||||| | || |||||||| | ||||| Sbjct 3634 GACACCACCGGCAGTCTCGATACCAAGCGAGAGAGGCGCAACATCCAAGAGGAGAAGGTC 3575 Query 6991 TTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGC 7050 ||| ||| ||||| | | ||| || || ||||| | || ||||| || Sbjct 3574 TTGGGTCTTCTCGGAAGTATCACCGGAAAGGATAGCAGCCTGGACGGCGGCACCGTAGGC 3515 Query 7051 GACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 ||| ||||||||||| || || | || || | || |||| || ||| Sbjct 3514 GACGGCCTCATCGGGATTGATGGACTTGTTGGGCTCCTTACTGTGAAA 3467 >seq11770 Length=10111 Score = 152 bits (168), Expect = 7e-32 Identities = 522/806 (65%), Gaps = 26/806 (3%) Strand=Plus/Plus Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 || ||||| || | || ||||| || || |||||||| |||||||| | || || || Sbjct 5414 GCAGCTTGAACAGCAGCACCGTAAGCAACAGCCTCATCAGGGTTAATGCTCTTGTTGAGC 5473 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 | ||| ||| | || || | || ||| ||||| || ||||| ||||||||| Sbjct 5474 TGACGACCACCGAAAAAGTCGGAAACCAAAGATTGGATTTTGGGAATTCGGGTCGATCCA 5533 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204 || ||||| ||||| || | || || || || |||| ||| | |||| | || Sbjct 5534 CCAACCAAGACGATCTCCTCAACCTTGGACTTGTCGACCTTGGCGTCTTTCAAGACCTTG 5593 Query 7205 TCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 || || || |||| | || ||||| | | | | ||||| ||||| ||| Sbjct 5594 TCAACGGGATCCAGGGTGGAT---CGGAAAGTGGCGGCATTGATCTCCTCGAAACGAGCA 5650 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 |||| || |||| | |||| || | || | | |||| || || | || | || || Sbjct 5651 CGGGAGATTGATGCAGAGAAGTCGGCACCTTGGAATAAGGAGTCGACCTCGACAGTGGTC 5710 Query 7322 TG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAA 7379 || || || || || | ||||| || || || ||||| |||| || | ||| |||| Sbjct 5711 TGGGTGACG--GAGGAGAGTGTTCGTTTGGCACGTTCACAGGCCGAACGGAGACGTCGAA 5768 Query 7380 GGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT 7439 | ||||| | | ||| || || | || ||| || || || || | ||||| Sbjct 5769 GAGCACGGGCATCACCATCGATGTCGTGTTTGGTTTTTCGCTTGAATTCGGCTTTGAAGT 5828 Query 7440 G-TCGAAG-GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 | || ||| ||| | | ||||||||||| ||||| | || ||||| || ||||| || Sbjct 5829 GCTCTAAGAGAGCGTTG--TCGAAATCTTCTCCACCAAGATGGGTATCACCAGCGGTAGC 5886 Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACC 7557 ||||| |||| | || || ||| | | |||||||| || || ||||| || Sbjct 5887 CTTGACAGCAAAAACCCCACCGGTGATGGAGAGGAGAGAAACATCGAAAGTGCCACCTCC 5946 Query 7558 CAGGTCAAAAATGAGTACG---------TTCGTAT-CGTCGTCT--TTGTTCTTATCGAG 7605 || ||| ||||| | ||| ||| | | | || ||| || || | | | Sbjct 5947 CAAGTCGAAAATCAAAACGGTGCGCTCCTTCTTGTCCTTCTTCTCACTGGCCTCACCCAA 6006 Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGC 7665 |||||| |||||||| || || || || || || || ||||| ||| | || ||||| Sbjct 6007 ACCGTAGGCGATAGCGGCGGCAGTAGGCTCGTTGATGATACGGAGAACATCGAGACCAGC 6066 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| | | ||||| || || | | || || || || || ||||| || ||||| || Sbjct 6067 AATGGCACCGGCATCCTTGGTAGATAACCGCTGAGAGTCATTGAAGTAAGCGGGGACGGT 6126 Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785 | ||| || | | |||| | || || | | | || ||| | || || | |||||| Sbjct 6127 AATGACTGCCTTCTTGACCTCTTTGCCTAATTTGGTCTCGGCGGTTTCCTTGAGTTTGGT 6186 Query 7786 AAGAACCATCGATGAAATCTCTTCAG 7811 | ||||| | || || |||| || Sbjct 6187 CAAGACCATTGCAGAGATTTCTTGAG 6212 >seq3259 Length=9191 Score = 113 bits (124), Expect = 6e-20 Identities = 311/465 (67%), Gaps = 14/465 (3%) Strand=Plus/Plus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACC--TTCAG 183179 ||||| | |||||| | |||||||| |||||| ||||||| ||||| || || || Sbjct 5014 ATATCCATAGGATTATAATTTGGTATATCTGAACTCCATCCGGTTCCAATTCCACTTGAG 5073 Query 183180 TTCCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTAC 183239 |||||||| || || ||||||| | ||| ||||| | || ||||||||||| | Sbjct 5074 --CCATTTACTAAGACCATCGGTAAGACAGGTACATACCATTCTGGTTCGATTTGAGCTC 5131 Query 183240 CGTCGTC-GTCGAGATAGTTTAATACTGGATCATCTTTGGGATCAAAAAGTATTCTCGCG 183298 | ||||| ||| || || ||||| || ||||||||| || || | | || | Sbjct 5132 CATCGTCAGTCAAG-TAATTTAAGACATGATCATCTTGAGGTGGGAAGATCACCCTGGTA 5190 Query 183299 TTTTTAGTCAAT-TTTGTAAATATATACC-TGGTTTGACTCGCGTCTTTACCACCCATGA 183356 | || ||||| || ||||| ||||||| || | || || ||||||||||| || Sbjct 5191 ATCTT-TTCAATATTGGTAAAGATATACCTTGCAGAGGCT-GCATCTTTACCACCATTGG 5248 Query 183357 GACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAAT 183416 | |||||| ||||| ||| ||| || | ||| || ||||| || ||| | Sbjct 5249 CTCTTGTACCGAATTGTCCATTAGGTGAAAGCACATTGATGTTATTGCTTCCGACAAAGT 5308 Query 183417 TATGTGCTAATTTTACAATTGTATCTGCCAAAGAGAC--TTCACCGTGGTGATACGATGT 183474 | ||||| | ||||| || | || |||| | ||| ||||| ||||| | || Sbjct 5309 TTTGTGCAAGAGCGACAATCGTTTGTG--TAAGACTCTGTTCCCCGTGATGATAAGCTGA 5366 Query 183475 TTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGTAAGATTCTTTGT 183534 | ||| | | ||| | | ||||| || || || || || | | | | ||| || | Sbjct 5367 ATGTTCGGCACAGTAACCTCCCAATTGAGCTACTTTAATCTCCGCTTTCAATTTCCTTTT 5426 Query 183535 GAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATC 183579 ||| || || |||| || |||||||| ||||| || || || Sbjct 5427 GAAGCAAGCAAATAAAACCTTTCGTTGACCAGGTTTGAAGCCGTC 5471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/301 (67%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 184084 ATCGGTCATGATCATGAGTCTTCCGTATCTGA--GTTCGGAGAGTGATGTATACACTTTC 184141 ||| ||||||||||| | ||||| |||| | | | || || ||||| ||| Sbjct 6198 ATCCGTCATGATCATCAAACTTCCATATCGCAAGGATTCTCGACTG--GTATATTTTTTG 6255 Query 184142 CCTTGCTGAAGCCCCAAAATCTTTTTAAGATCATTAAACTCCTTGTTTTCGGTAA--GTT 184199 ||||| ||||| |||| |||||| || | || | | ||| | |||| || ||| Sbjct 6256 CCTTGTTGAAGTCCCATAATCTTCTTGATATGTTGGATCTCA--GCATTCGCCAACAGTT 6313 Query 184200 GTTTTACACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAAT 184259 | || |||| || || || ||||| |||| || | ||| || |||||||| |||| Sbjct 6314 GACTTCCACTAGCTTCTCGAACGTTTAGTAATTTTCCACGAAGTGGGAAAACACCATAAT 6373 Query 184260 GATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGG 184319 |||||| || | || || | ||||| | || | | || || ||||| ||||| | Sbjct 6374 TATCACGTCCGATGACCGATAACCCAGCGACAGCCAAGGACTTGGCTGAATCTCCTTCCG 6433 Query 184320 TAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTT 184379 | | ||||||||||| | | | |||| ||||| ||||||||||| || |||| Sbjct 6434 TTAAGATAAGAGTACAATCTGCTCCTTTCTTGGTCCCGGCGTTATTGGCATCTTCTAGTT 6493 Query 184380 T 184380 | Sbjct 6494 T 6494 >seq14177 Length=10849 Score = 109 bits (120), Expect = 7e-19 Identities = 181/261 (69%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||||||||| ||||| || || || || || || || | ||| Sbjct 4257 ATCGAAATCTTCACCACCCAAGTGGGTATCACCAGCTGTAGCCAACACCTCGAACACACC 4198 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCA---AAAATGAG 7572 | || || | | |||||||| || ||||||||||| || ||| | ||||| Sbjct 4197 CTCATCGATCGAAAGGAGTGAAACATCGAAGGTACCACCACCAAGATCATAGACAATGAT 4138 Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | |||| || | ||| ||||||| ||||| || || ||||| || | || Sbjct 4137 TTGACGT--------TCACCCTTGGTCTTATCAAGACCATAGGCAATAGCGGCGGNGGTG 4086 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || | |||||||||| ||||| ||||| || || | ||||| || || || Sbjct 4085 GGCTCGTTGACAATACGAAGAACGTTCAAACCAGCGATCGTACCAGCATCCTTAGTAGCC 4026 Query 7691 TGTCGTTGCGAATCGTTAAAG 7711 || ||||| | || || ||| Sbjct 4025 TGACGTTGAGCGTCATTGAAG 4005 >seq12271 Length=8926 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22627 TCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAATATC 22686 || || ||||| || || || |||||||| || || || | | || ||| | ||| Sbjct 1625 TCTCCAAGACGAGGAAGAACGTTTGTGACACGTAAGATCACCCGAGCAGTGGCTGAGATC 1684 Query 22687 AGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGT 22746 || ||| ||| || | |||||||| ||| | ||| ||| ||||||||||| Sbjct 1685 AGCTTAGGCTTGCAATCTTGCCTTTACCTTGGAAACTTGTCTGCCAAAAGAGATTGGGGT 1744 Query 22747 CATGCACGCGATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGAT 22806 ||||| ||||| || || | ||||||| ||| |||||||||||| | | |||||| Sbjct 1745 CATGCCAAAGATTATGTTGAAGGCATGTGGAGAATGTTACAACAAGATGTAGCCGAAGAT 1804 Query 22807 TTTGTTATTGCAACAGGCGTAACA 22830 | ||| | || || || | |||| Sbjct 1805 TATGTGTTAGCTACTGGTGAAACA 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635019881327320