Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq12155 120 4e-22 seq12271 82.4 9e-11 >seq12155 Length=30793 Score = 120 bits (132), Expect = 4e-22 Identities = 405/623 (65%), Gaps = 12/623 (2%) Strand=Plus/Minus Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 ||||||||||| | ||| |||||| || ||||| ||||| || ||| | || | Sbjct 28721 AATCAAAAGAACCTTGGTACCATCAAGTCATCGAACCTGTGTACTGAGATCATCGAGTAC 28662 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 ||| | ||| ||| ||| || |||||| | || || || || || || | |||| | Sbjct 28661 TCAGCCCCAGACGAGGTGGCGGTTTGTAACTTGGCCTCGATAGCGCTGCCGACGTATAT- 28603 Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535 || || || | | ||||| |||| || |||||||| ||||| ||||| Sbjct 28602 ----CACCGATGGAGTC-TATGATTTCCAAAAGCTACACGAAGTAACGAAGGAAGTCACG 28548 Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 112595 ||| | || | | |||||| || | ||||||||| | ||| || || Sbjct 28547 TGGAACTTGAATCGTATAATTGATGTGAACTACTACCCCGTTCCGGAAGCTAAAAAGTCC 28488 Query 112596 AATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC--ATTC 112653 || |||||||| || || ||||| | || || | || | || |||| ||| | || Sbjct 28487 AACATGAGACATCGCCCCATTGGAATTGGAGTAAACGGATTGGCAGATGCGTTCCAAATC 28428 Query 112654 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGA 112713 ||| || | |||| || || ||||||||| || | || || | || || |||| Sbjct 28427 -TTGAAGCTTC-CATTCGACTCACCGGAAGCGAAGAAATTGAACGCCCAGATCTTCGAGA 28370 Query 112714 CAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATG 112773 || | || ||||| || ||||| || ||| | || | || || || |||||| Sbjct 28369 CACTTTACCACGCAGCACTTGAAGCCTCAAACGAGCTTGCCGTGGCGGAAGGCGCATATG 28310 Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 112833 |||| ||| ||||| || ||| ||||| | | |||| |||||||||| || Sbjct 28309 AAACGTTTCCCGGTTCGCCCGCTAGTCAAGGAGAATTACAATACGATATGTGGG-GCGTC 28251 Query 112834 AGACCAAGCTTCACTACGAC-TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 112892 | ||| | | ||| ||||||| ||| || ||| || |||| | || || Sbjct 28250 ACACCCTCCGACCTGTGGACATGGGACGATCTGAAAGAAAAGATTAAGGCTACCGGCCTG 28191 Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952 | ||| |||||| | || || ||||| || || || ||| |||||| ||||| Sbjct 28190 AGAAACTCACTTTTGCTTGCGCCGATGCCTACTGCTTCGACCAGTCAAATCATGGGTTTC 28131 Query 112953 AATGAATGCTTTGAACCCTACAC 112975 |||||||| ||||| || ||||| Sbjct 28130 AATGAATGTTTTGAGCCTTACAC 28108 >seq12271 Length=8926 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13887 AGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAG 13946 |||||||||||||| || || || |||||||||| |||||| ||| | |||||||| Sbjct 1733 AGAGATTGGGGTCATGCCAAAGATTATGTTGAAGGCATGTGGAGAATGTTACAACAAGAT 1792 Query 13947 GAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 13984 | |||||| || ||||| |||| || ||||| || || Sbjct 1793 GTAGCCGAAGATTATGTGTTAGCTACTGGTGAAACACA 1830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620632039760560