Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7247 181 2e-40 seq13718 93.3 9e-14 >seq7247 Length=24577 Score = 181 bits (200), Expect = 2e-40 Identities = 159/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || | ||||||||| ||||| |||||||| |||||||||||||| |||| | Sbjct 6968 AGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 7027 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | || |||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 7028 CCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGGATGCCTTCC 7087 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || ||||||||| ||||| || ||||| || ||||| ||||| Sbjct 7088 TTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGACTTCGAGGGTG 7147 Query 195103 ACCGTCTTTCCTGTCAAA 195120 | ||||| || |||||| Sbjct 7148 ATGGTCTTGCCAGTCAAA 7165 Score = 149 bits (164), Expect = 1e-30 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| || || || || ||||||||||| ||||| || | ||||| || Sbjct 7266 ACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCCTCC 7325 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || ||||| || | |||||||||||| || ||||| ||||| || |||||| Sbjct 7326 AATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGGAATCCCTTCCTTATCTTGA 7385 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||| || ||||| ||||||||| ||| ||||| || || | || || Sbjct 7386 ATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGACTTCCAGTGTGATTGTTTTA 7445 Query 195112 CCTGTCA 195118 || |||| Sbjct 7446 CCAGTCA 7452 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| |||||||| ||||| ||||| || || ||||| | || ||||| Sbjct 8125 AACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTGCGACCGTCTTC 8184 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct 8185 AAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCTTTGTCTTG 8244 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || ||||| ||||| || ||| ||||| || || | ||||| Sbjct 8245 AATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGAGTGATGGTCTT 8304 Query 195111 TCCTGTCAAA 195120 || |||||| Sbjct 8305 ACCAGTCAAA 8314 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| || || || || ||||||||||| || || | ||||||||||| || Sbjct 8424 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCGAGTTGT 8483 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || |||||||| ||||| |||||||| ||||| |||||||| |||||||| || Sbjct 8484 TTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTG 8543 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || |||||||| || ||| ||| || || ||||| | ||||| || || Sbjct 8544 GCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGT 8602 Score = 140 bits (154), Expect = 7e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| || || ||||| ||||||||||| || || || | |||||||| Sbjct 7839 ACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCGAGTGTGCGACCATCTTCC 7898 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || || || ||||| || |||||||| ||||| ||||||||||| ||||| || Sbjct 7899 AATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGG 7958 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||| || |||||||| || ||| || || || |||| || || Sbjct 7959 ATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAACCTCCAGCGTAATTGTTTTA 8018 Query 195112 CCTGT 195116 || || Sbjct 8019 CCGGT 8023 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| |||||||||||||| || || || || | || ||||| ||||| Sbjct 7559 TGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCTAGCGTACGTCCGTCTTCCAGCTGT 7618 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| ||||| |||||||| || || || || || || ||||| ||||||||| Sbjct 7619 TTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTGTCCTGAATTTTT 7678 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || || ||||| || ||| ||||| | ||||| ||||| || || Sbjct 7679 GCCTTGACATTGTCGATTGTGTCAGACGATTCGACTTCCAAGGTAATAGTCTTACCGGT 7737 >seq13718 Length=8986 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 195008 AGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGT 195067 |||||||||||||||||||||| ||||||||||| || |||||||| || ||| || | Sbjct 2975 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 3034 Query 195068 TCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||| ||||| | | ||| || || ||||| | ||||| || || Sbjct 3035 TGTCAATTGTGTCGGCAGCTTCGACCTCGAGGGTGATGGTCTTACCCGT 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109279416741041