Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq13844 114 1e-19 seq7247 111 1e-18 seq14164 104 2e-16 seq14177 91.5 1e-12 >seq13844 Length=20562 Score = 114 bits (126), Expect = 1e-19 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| | || || || ||||||||||||| | ||||| ||| |||| ||||| | | || Sbjct 3117 GCTGTACGACGACTTCGAACTGCTTGCGAGCGTGCCAAGCGAACTCTCTCATCCGCTGCT 3176 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 |||||| |||| ||| | ||||| | || ||||| | || | | ||| || || | Sbjct 3177 CAAACCTCTATCGAAATTGATTCCCTTTTCGAGGGTGTCGACTTCTACACGTCTCTTACC 3236 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| ||| || || | || || | || ||||| || || || || || || Sbjct 3237 CGGGCCCGATTCGAGGAGCTCTGCCAAGACTTGTTCAGAAAGACTATGGAGCCTGTCGAG 3296 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 |||| || ||||| || |||||||| || |||| || ||||| ||||| | |||||| Sbjct 3297 AAAGTGTTGAGAGACTCCAAGATTGACAAGGCCAATGTGCATGAGATTGTATTGGTTGGT 3356 Query 552135 GGATCTAC 552142 || || || Sbjct 3357 GGTTCCAC 3364 Score = 107 bits (118), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | ||||| || || |||||||||||| ||||| |||| | Sbjct 2148 AGCTGTCGGTATCGATCTCGGAACTACCTACTCTTGTGTTGGTGTATGGCAGAATGATCG 2207 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||||| |||||||| ||||| || ||| | || || || ||||| || ||||||| Sbjct 2208 TGTTGAAATCATTGCCAACGATCAGGGAAACCGTACCACACCTTCTTACGTCGCTTTCAC 2267 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA--GCCACTGGTAATCCTACC 550168 || |||||| || | ||||| || || || ||||| | || || || || | Sbjct 2268 TGACTCTGAACGGTTGATCGGTGACGCCGCCAAGAATCAAGTGGCAATG--AACCCCCAC 2325 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGG 550200 || || |||| || || || ||| | ||||| Sbjct 2326 AACACCGTTTTCGACGCCAAGCGTCTCATTGG 2357 >seq7247 Length=24577 Score = 111 bits (122), Expect = 1e-18 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| ||||| | |||||| || ||| || || |||||||| || || || | | Sbjct 8409 AGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGT 8468 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| ||||||||||||||||| ||||| | |||||| || || ||||| |||||| Sbjct 8469 CCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCT 8528 Query 563377 TTATCTTGAATTTT 563390 ||||||||||| || Sbjct 8529 TTATCTTGAATCTT 8542 Score = 96.9 bits (106), Expect = 3e-14 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | || || ||| ||||| ||| ||||| ||||| ||||| | Sbjct 8117 AGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTGCGA 8176 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||| || || ||||| ||||| | ||| ||||||||||| || || ||| Sbjct 8177 CCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCT 8236 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || |||||||| || || || |||||||| || | | || | | ||||||||| Sbjct 8237 TTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAG-GATTCGACTTCGAGAGT 8295 Query 563436 AACAGTTTTACCAGT 563450 | || |||||||| Sbjct 8296 GATGGTCTTACCAGT 8310 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| || ||| || ||||||||||| || || || | Sbjct 7257 AGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGA 7316 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || | ||| ||||| || ||||| | || ||| || || || ||||| ||||| Sbjct 7317 CCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGGAATCCCTTCC 7376 Query 563377 TTATCTTGAATTTT 563390 |||||||||||||| Sbjct 7377 TTATCTTGAATTTT 7390 Score = 93.3 bits (102), Expect = 3e-13 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTCTTG 563317 ||||| ||||||||||| || ||| ||||| |||||||||||||| || || | Sbjct 7833 CGGAGCACAAGATGAAGAGTTGATTCCTTTTGG--ATATTGTAATCAGCGAGTGTGCGAC 7890 Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377 |||||| | |||||| || ||||| || || | ||| ||||| || ||||| ||||| | Sbjct 7891 CATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGAATGCCTTCCT 7950 Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTA 563436 | || || ||||| || || || || || |||| ||| | | || || ||| Sbjct 7951 TGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAG-ATGATTCAACCTCCAGCGTA 8009 Query 563437 ACAGTTTTACCAGTAAGA 563454 | |||||||| |||||| Sbjct 8010 ATTGTTTTACCGGTAAGA 8027 >seq14164 Length=14006 Score = 104 bits (114), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 344420 TAAATGGAGTTGCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATT 344479 |||| || ||||||||||| | ||| | || | | ||||||||| || | ||||| Sbjct 7581 TAAACGGTGTTGCATCTCCTTCATTCCCAGTGATCGTAGAAACTTTACTTAAAAGACATT 7640 Query 344480 CAATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAG 344539 ||| ||| || || |||||||| || || || || ||||||||| || ||||| | Sbjct 7641 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATGATGATATCTG 7700 Query 344540 GAATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTTTAAA-TCCAACTGTT 344598 || | ||| ||||||||| | |||| | | | || | ||| ||| || ||| Sbjct 7701 GACAAATCCCTTCAGATGTGAATGGCATATCTTCTTG-TCTATATAAAATTCCGACCGTT 7759 Query 344599 CCTTTTTGTCCAGCTCTTGATGAGAATTTATCACCT 344634 ||||| |||||| |||||||| ||||||||| ||| Sbjct 7760 CCTTTCTGTCCATGTCTTGATGCGAATTTATCTCCT 7795 >seq14177 Length=10849 Score = 91.5 bits (100), Expect = 1e-12 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 550424 TTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGT 550482 || |||||| | |||||||| |||||||| |||||||| ||| || ||||| | || || Sbjct 4006 TTCAATGACGCTCAACGTCAGGCTACTAAGGATGCTGGTACG-ATCGCTGGTTTGAACGT 4064 Query 550483 TCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||||| |||| || || || | || || |||| ||||| |||||||| Sbjct 4065 TCTTCGTATTGTCAACGAGCCCACCNCCGCCGCTATTGCCTATGGTCTTGATAA 4118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028543823614270