Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7247 131 1e-25 >seq7247 Length=24577 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || | |||||| || ||||| || || ||||||||||| | Sbjct 7246 TTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCG 7305 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | |||| ||||||||||| || || || ||||| || ||||| || || | Sbjct 7306 CAAGTGTGCGACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTG 7365 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||||||||| || ||| | || | |||||| || | ||| | Sbjct 7366 GAATCCCTTCCTTATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGA 7425 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445 |||| || |||| ||||| || || Sbjct 7426 CTTCCAGTGTGATTGTTTTACCAGT 7450 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | || || | || | |||||| || ||||| ||||| ||||||||||| ||| Sbjct 7821 CCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCG 7880 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| || || ||||| |||| ||| |||||||| || ||| Sbjct 7881 AGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGA 7940 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| || || | || | |||||||| | ||| || Sbjct 7941 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAACC 8000 Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445 || || || | ||||| ||||| Sbjct 8001 TCCAGCGTAATTGTTTTACCGGT 8023 Score = 122 bits (134), Expect = 7e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || || ||||| ||||| || ||||| || ||||||||||| | |||| || Sbjct 6971 CGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCA 7030 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||| ||||||||||| || | |||||||| || || || |||||||| ||| Sbjct 7031 TCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGGATGCCTTCCTTA 7090 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||| || || || | || | || || || | || ||||| || |||| Sbjct 7091 TCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGATG 7150 Query 101435 GTTTTGCCGGTTAAA 101449 || ||||| || ||| Sbjct 7151 GTCTTGCCAGTCAAA 7165 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| || ||||| || || || ||||||||||| | || | |||| || Sbjct 8418 ACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCG 8477 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || ||||| || | ||| || || || || ||||| ||||||||||||||| Sbjct 8478 AGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGA 8537 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | ||| || || || |||| || ||| Sbjct 8538 ATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTG 8597 Query 101441 CCGGT 101445 ||||| Sbjct 8598 CCGGT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396209707987611