Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7247 100 2e-16 >seq7247 Length=24577 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||||||||| ||| ||| |||||||||||||| |||| ||| | || Sbjct 7544 AGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCTAGCGTACGT 7603 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||| || ||||| || || || || |||||||| | || | |||||| Sbjct 7604 CCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGGATACCCTCC 7663 Query 48669 TTGTC 48673 ||||| Sbjct 7664 TTGTC 7668 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| |||||||| |||||||| | || |||| Sbjct 6968 AGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 7027 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || ||||| ||||| || ||||||||||| || | || | ||| ||| Sbjct 7028 CCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGGATGCCTTCC 7087 Query 48669 TTGTCGCTAATCTT 48682 || || |||||| Sbjct 7088 TTATCTTGAATCTT 7101 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| ||||||||||||| || | ||| | || ||||| || || || ||||| Sbjct 7857 TCCTTTTGGATATTGTAATCAGCGAGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAG 7916 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| || |||||||| | ||||| ||| |||||||| Sbjct 7917 ATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTC 7954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380871567205029