Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7247 116 2e-20 seq13026 87.8 1e-11 seq13844 86.0 4e-11 >seq7247 Length=24577 Score = 116 bits (128), Expect = 2e-20 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | || || ||| ||||| || || || ||||| ||||| Sbjct 8113 ACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGT 8172 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||||||||||| |||||||| ||||||||||||||||||||||| || || Sbjct 8173 GCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACC 8232 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || |||||||||||||| |||||| ||||| || || Sbjct 8233 CTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTC 8274 Score = 114 bits (126), Expect = 8e-20 Identities = 152/205 (74%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||||||||| | ||| | ||| || || ||| |||| ||| ||| || |||||||| Sbjct 7540 ACGAAGACGCAATACCAAATGTAGGGTGGACTC-CTTTTGAAT-ATTGTAGTCAGCTAGC 7597 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||||| || || || || || ||||||||||||||||||||||| || || Sbjct 7598 GTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGGATA 7657 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 || |||||||| ||||| ||| |||||| || || || |||| | | | || | Sbjct 7658 CCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGACTTCC 7717 Query 480728 AAGGGTAATAGTTTTACCGGTGAGA 480752 || ||||||||| |||||||||||| Sbjct 7718 AA-GGTAATAGTCTTACCGGTGAGA 7741 Score = 107 bits (118), Expect = 1e-17 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 ||||| ||||||||||| || ||| || | ||| |||||||| || || | | Sbjct 7833 CGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCGAGTGTGCGACCA 7892 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||| || |||||||| || |||||||||||||| || ||||| ||||||||| Sbjct 7893 TCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTG 7952 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || || || ||||| || || || |||| || | || || || ||||| Sbjct 7953 TCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAA-CCTCCAGCGTAAT 8011 Query 480737 AGTTTTACCGGTGAGA 480752 ||||||||||| ||| Sbjct 8012 TGTTTTACCGGTAAGA 8027 Score = 104 bits (114), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| || ||| || | ||| ||||| || || || Sbjct 7253 ACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGT 7312 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || | |||||||||||| ||||| | |||||||| || || ||||| || Sbjct 7313 GCGACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGGAATCCC 7372 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||| |||||||| || |||||| |||||||| || Sbjct 7373 TTCCTTATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTC 7414 Score = 95.1 bits (104), Expect = 8e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| ||||| | |||||| || ||| || | || ||||| || || || Sbjct 8405 ACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGT 8464 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| ||||| ||||| ||||| ||||||||||| || || || ||||| || Sbjct 8465 ACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACC 8524 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||| || ||||||||||| || ||| ||||| ||||| Sbjct 8525 TTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATC 8566 >seq13026 Length=36335 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 318646 CCATTATCACCATAAACACATTGAATCAATTTATC--ATTAGCATTTCTTACAGTACCAT 318703 |||| |||||||||||| |||| | | | | | || || |||| ||| || |||| Sbjct 21159 CCATCTTCACCATAAACAAATTGCACGATATCACCCAATGAG--TTTCGTACCGTTCCAT 21102 Query 318704 CATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCTTTGTACATAACCTGTGT 318763 |||| | || | | ||| |||| | ||| || ||| |||| || | ||||||||| | Sbjct 21101 CATAAGCTACCATCACATCCTCTAATGCTTTCACCAATCTTCTCTGGATATAACCTGTCT 21042 Query 318764 CTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAAAAGA 318823 |||| || || | ||| |||| ||| | |||||| | || |||||| | || || |||| Sbjct 21041 CTGCTGTCTTTACAGCGGTATCAATCAAACCTTCACGACCGGCCATAGCATGAAAGAAGA 20982 Query 318824 ATTC 318827 | || Sbjct 20981 ACTC 20978 >seq13844 Length=20562 Score = 86.0 bits (94), Expect = 4e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||||||||| | || ||||||||||| ||||| || |||||| | ||||| Sbjct 3794 GGTATTCCTCCTGCTCCTCGCGGTGTTCCTCAAATCGAAGTCACCTTTGATGTGGATGCC 3853 Query 476150 AATGGTATTCTTAATGTTACTGCTT 476174 || ||||| || || ||| |||||| Sbjct 3854 AACGGTATCCTCAACGTTTCTGCTT 3878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267569106520004