Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7247 120 6e-22 >seq7247 Length=24577 Score = 120 bits (132), Expect = 6e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | || || || || || || | ||||| ||| ||| || || || ||||| | Sbjct 6958 ACCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGA-ATGTTGTAATCGG 7016 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | |||||| |||| |||||||||||||| |||||||||| || |||||| || |||| Sbjct 7017 CAAGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTG 7076 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| |||||||| || || || || || || | ||| || || || | Sbjct 7077 GGATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGA 7136 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAA 192515 |||| || || ||||| || ||||| || Sbjct 7137 CTTCGAGGGTGATGGTCTTGCCAGTCAA 7164 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | ||| | || || |||||| ||||| Sbjct 7245 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCC 7304 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| |||||||| || ||||| || || |||| ||||| || ||| Sbjct 7305 GCAAGTGTGCGACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGT 7364 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| || ||||| |||| || || ||||| Sbjct 7365 GGAATCCCTTCCTTATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCG 7424 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| || || || ||||||||||| Sbjct 7425 ACTTCCAGTGTGATTGTTTTACCAGT 7450 Score = 105 bits (116), Expect = 1e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | |||||| ||||| ||||||| || | ||| ||| || ||||| || || Sbjct 7532 ATACCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGA-ATATTGTAGTC 7590 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || ||| | || |||| ||||| || || || || | | ||||||||||| Sbjct 7591 AGCTAGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGG 7650 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || || || || ||||| || ||||| || | || |||||||| Sbjct 7651 TGGGATACCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTC 7710 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| | ||||| || ||||| || Sbjct 7711 GACTTCCAAGGTAATAGTCTTACCGGT 7737 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | ||||| |||||| || || || ||| Sbjct 8105 ATACCACCACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCA 8164 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | ||| || ||||||||||| | | ||||||||||| Sbjct 8165 GCGAGAGTGCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGA 8224 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || || ||||| || | || || ||||| Sbjct 8225 GGGATACCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCG 8284 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||||| ||||| ||||| |||||||| || Sbjct 8285 ACTTCGAGAGTGATGGTCTTACCAGTCAA 8313 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| | ||| || |||| ||||||||||| ||||||||||| | | Sbjct 7865 GATATTGTAATCAGCGAGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACG 7924 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||| || || || ||||| || || || ||||| || || || || | Sbjct 7925 TTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGT 7984 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 || || ||||| || || || ||||| |||||||| || Sbjct 7985 GTCAGATGATTCAACCTCCAGCGTAATTGTTTTACCGGT 8023 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | ||| ||||| | ||| | || || ||| || ||||| Sbjct 8397 ATACCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCG 8456 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| |||| || | |||||| || |||||||| | | || || || ||| Sbjct 8457 GCCAGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGT 8516 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || || ||||| || | ||| || ||||| Sbjct 8517 GGAATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCA 8576 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || || || ||||| || || || Sbjct 8577 ACCTCGAGGGTGATGGTCTTGCCGGT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984300596056050