Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7247 132 4e-26 >seq7247 Length=24577 Score = 132 bits (146), Expect = 4e-26 Identities = 159/210 (76%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAA 24783 || ||||||||||| |||||||| || || ||| | | ||||| | || |||| || Sbjct 8026 CTTACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAAG 7967 Query 24784 ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGG 24843 | ||| ||||| ||||| ||||| || || || |||||||||||| |||||||||| || Sbjct 7966 GCCAAA-ATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGG 7908 Query 24844 GAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 |||||| |||| ||| ||| | || | | ||||| || || ||||||||||| || Sbjct 7907 GAAACAATTGGAAGATGGTCG-CACAC-TCGCTGATTACAATATCCAAAAGGAATCAACT 7850 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || | ||| | |||||||| |||||| Sbjct 7849 CTTCATCTTGTGCTCCGATTGCGTGGAGGC 7820 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || || || || |||||||| || | | || ||| | || | || || Sbjct 7161 ACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAACGTCAAGGCC 7102 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| ||||| || ||||| || || || || ||||| || | |||||||| || ||| Sbjct 7101 AAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGTAAA 7042 Query 24848 CAGCTGGAGGATTCGAGAA-ACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 || |||||||| | ||| || || | ||||| |||||||||||||| || || || || Sbjct 7041 CAATTGGAGGATGGGCGAACACTTGCC-GATTACAACATTCAAAAGGAGTCTACTCTTCA 6983 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| |||||| |||| || || Sbjct 6982 CTTGGTCTTGCGACTGCGTGGTGG 6959 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || |||||||| |||||||| | ||||| ||| | | |||||| | || | || || Sbjct 7740 CTCACCGGTAAGACTATTACCTTGGAAGTCGAATCGTCTGACACAATCGACAATGTCAAG 7681 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||| || || ||||| || || || || || |||||||||||| | || || |||||| Sbjct 7680 GCAAAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGGG 7621 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||||||||| || | | | | || || || ||||||||||| || || ||| Sbjct 7620 AAACAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCTA 7561 Query 24905 CACTTGGTGTTGCG 24918 || ||||| ||||| Sbjct 7560 CATTTGGTATTGCG 7547 Score = 109 bits (120), Expect = 5e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || || || |||||||| ||| || |||||||| | || | || || Sbjct 8310 ACTGGTAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 8251 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| ||||||||||| || || ||||| |||||||||||| | |||||||| ||||| Sbjct 8250 AAGATTCAAGACAAAGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGGAAG 8191 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || || | | | | || || |||||||| || || || || || ||| Sbjct 8190 CAACTTGAAGACGGTCGCACTCTCGCTGACTACAACATTCAGAAAGAGTCTACTCTCCAC 8131 Query 24908 TTGGT 24912 ||||| Sbjct 8130 TTGGT 8126 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || ||||| || || || || ||||| || ||| | |||| || | || | || || Sbjct 8605 CTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAG 8546 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||| ||||| |||||||| || || || || || |||||| | ||||||||||| Sbjct 8545 GCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGA 8486 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| || || ||| | | | || | ||||| ||||| || |||||||| || || Sbjct 8485 AAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTT 8426 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| | || |||| || || Sbjct 8425 CATTTGGTACTTCGTCTGCGTGGTGG 8400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449817613830440