Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7247 113 3e-20 >seq7247 Length=24577 Score = 113 bits (124), Expect = 3e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || || ||||| |||||||| || || || | |||||| Sbjct 8119 ACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTGCGACC 8178 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || |||||| | || | | ||| ||||| || || ||||||||||| Sbjct 8179 GTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCTTT 8238 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | |||||| | || | ||||| || ||| ||||| ||||| | Sbjct 8239 GTCTTG-AATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGAGTGA 8297 Query 29750 TAGTTTTGCCAGTTAA 29765 | || || ||||| || Sbjct 8298 TGGTCTTACCAGTCAA 8313 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||||||||| |||||||| || || ||||| ||||| || Sbjct 8400 CCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCC 8459 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| ||||||||||| || ||| | || | | |||||| || || ||| Sbjct 8460 AGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGA 8519 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| ||| || | || ||| | || | || || ||| ||| || Sbjct 8520 ATACCTTCTTTATCTTG-AATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAAC 8578 Query 29739 TTCAAGAGTTATAGTTTTGCCAGT 29762 || || || || || ||||| || Sbjct 8579 CTCGAGGGTGATGGTCTTGCCGGT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385152425020443